iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099872

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Zinc finger family protein

Genbank Nucleotide ID

CM000338

Gene Name

POPTRDRAFT_643829; POPTR_0002s10220g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0002s10220	POPTR_0002s10220.1	POPTR_0002s10220.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	4.60e-08	34.6	151	193

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf..kdgplvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           C++Cl++f  ++ +++lp C+H+fh +C+  w       + + +CPlCr
   Q: 151  CSVCLSEFqqDETLRLLPkCNHAFHISCIDTW------LRSHTNCPLCR 193
           ********8755599999**************......**********8 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MAMKHRKLFP IGTETNQTID CPDFCDPACP YNCYPYSDYY LLPPPPPPPF LPQEHHLSPY 60
VIIIVALLAS FFLIVSYYVI VAKSCSGWCG SRNNTEPQAQ EDDTDEEFLD ENRVDHPIWF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGTAAGCTCA CCCACTAAGC CTCACACAAA CACATTGTTG CAGATCTATC TTTACTTTCC 60
TTCTCAATTT CTTCCACTTT AACAGTTTCT TTAATGGCGA TGAAACACAG AAAACTGTTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

pop:POPTR_0002s10220g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006062	Arabidopsis lyrata	48.91	8.00e-56	210.00
IUUC-Ath-007035	Arabidopsis thaliana	49.78	3.00e-54	205.00
IUUC-Bol-015703	Brassica oleracea	50.69	9.00e-56	209.00
IUUC-Bra-016736	Brassica rapa	50.69	4.00e-56	211.00
IUUC-Gma-043082	Glycine max	46.17	1.00e-72	266.00
IUUC-Mtr-058178	Medicago truncatula	46.23	1.00e-60	226.00
IUUC-Ppe-101257	Prunus persica	48.73	2.00e-69	255.00
IUUC-Sly-111911	Solanum lycopersicum	56.28	2.00e-61	228.00
IUUC-Stu-112635	Solanum tuberosum	58.45	4.00e-62	230.00
IUUC-Tca-120964	Theobroma cacao	56.31	1.00e-108	385.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence