iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007078

UUCD1 version

UUC-ArT-01451

Ensembl Protein ID

AT2G01735.1

UniProt Accession

Q8GUU2; RIE1_ARATH

Genbank Protein ID

AAN87884.1; AEC05490.1

Protein Name

E3 ubiquitin protein ligase RIE1; Protein RING-FINGER FOR EMBRYOGENESIS 1; RING-type E3 ubiquitin transferase RIE1

Genbank Nucleotide ID

AY168924; AC006069

Gene Name

RIE1; At2g01735; T8O11

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT2G01735	AT2G01735.1	AT2G01735.1
AT2G01735	AT2G01735.2	AT2G01735.2

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 activity/RING/RING	RING	18369404

Classification

Family	E-value	Score	Start	End
E3 activity/RING/RING	8.60e-09	36.7	307	348

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdg..plvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C+iCl++++dg  ++ lpC+H+fh +C+ kw       + +++CPlC+
   Q: 307  CCICLSSYEDGaeLHALPCNHHFHSTCIVKW------LKMRATCPLCK 348
           ********7776699****************......**********7 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Probable E3 ubiquitin-protein ligase required for embryo development.

Protein Sequence
(Fasta)

MSSYSSDSTA ARDQHAPLLR PRHDGSFSSS SSSARPTALA VLLGRITGHR APSMLVRETA 60
ARALEERRID WGYSKPVVAA DILWNAALVL ASAVMLVGTV EERPNEPIRV WICVYGLQCL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATAATTAACT TATAAGACTG TGTCTAATCT TCAATTAATG TTAATTAACT AAAACCATTT 60
TTTAAAACTG TCCGCCATGG CTTAGCGTTT TCTAGAGCAG AGAGAAAGAA GAATCTCAAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0808--Transferase
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0009793--P:embryo development ending in seed dormancy
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

ath:AT2G01735

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Bol-015130	Brassica oleracea	87.71	2.00e-163	567.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence