iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-007580

UUCD1 version

UUC-ArT-01230

Ensembl Protein ID

AT2G05720.1

UniProt Accession

Q9SIB8; Q9SIB8_ARATH

Genbank Protein ID

AAD25639.1; AEC05965.1

Protein Name

Putative U4/U6 small nuclear ribonucleoprotein; Transducin/WD40 repeat-like superfamily protein

Genbank Nucleotide ID

AC007170; CP002685

Gene Name

At2g05720; T3P4.4; T3P4_4

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT2G05720	AT2G05720.1	AT2G05720.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	6.20e-21	74.5	170	203

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrt 32
           gH   v +++f ++  +l+sG+ D+++++WDlr 
   Q: 170  GHIKQVLSVDFsPNgYHLASGGEDNQCRIWDLRM 203
           79999*******77799**************985 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MGPTELREAR IEITKDFIKR AALRIQRENR RRNDPDEDKN AETKLALKHC KDMVLGSSKF 60
GDDRPLTGCS LSRDGKILVT CSLSGVPKLW EVPQVTNKIV VLKGHKEHVT DVVFSSVDDE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGGTCCAA CAGAGCTTAG AGAGGCTAGA ATAGAAATTA CCAAAGATTT TATAAAGAGA 60
GCTGCTCTAA GGATTCAGCG TGAAAATCGG CGAAGGAATG ATCCAGATGA AGATAAAAAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0687--Ribonucleoprotein
KW-0543--Viral nucleoprotein
KW-0946--Virion
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:0046540--C:U4/U6 x U5 tri-snRNP complex
GO:0019013--C:viral nucleocapsid
GO:0030621--F:U4 snRNA binding
GO:0017070--F:U6 snRNA binding
GO:0000398--P:mRNA splicing, via spliceosome

KEGG

ath:AT2G05720

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence