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Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Ath-006925
UUCD1 version UUC-ArT-00162
Ensembl Protein ID AT2G23140.1
UniProt Accession O22193; F4ILG7; PUB4_ARATH
Genbank Protein ID AAB87116.1; AAM14930.1; AEC07418.1; ANM61792.1
Protein Name U-box domain-containing protein 4; Plant U-box protein 4; RING-type E3 ubiquitin transferase PUB4
Genbank Nucleotide ID AC002391; AC004401; CP002685; CP002685
Gene Name PUB4; At2g23140; T20D16.23
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT2G23140 AT2G23140.1 AT2G23140.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Post-translational Modifications (PTMs)
dbPPTdbPTMUniProt
Protein Expression/Proteomics
GPMDB
Status Reviewed
Details
Family Domain References (PMIDs)
E3 activity/RING/U-box U-box 23398263
Classification
Family E-value Score Start End
E3 activity/RING/U-box 4.10e-30 104.5 233 305
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 activity/RING/U-box
   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceenss 74
           ++++f Cp+sle+M+dPv+++sG+ty+++ I++w++ g k cP+trq+lt+++l+Pn+t+++li +wce+n++
   Q: 233  ILADFFCPLSLEVMTDPVIVSSGQTYEKAFIKRWIDLGLKVCPKTRQTLTHTTLIPNYTVKALIANWCETNDV 305
           6789******************************************************************987 PP
   
Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description


     Functions as an E3 ubiquitin ligase.
 Functions as an E3 ubiquitin ligase.
Protein Sequence
(Fasta)
MVEMEVLLRS ISSFLNLSSS KHIDLDPFEK YYKRVEELLR VLKPIADVVV TSDFVFDEKL 60
GKAFEELTQD VDQSIDLFRS WQAFSSKVYF VLQIESLLPK MRDTIVDTFQ FLMSSKNHLP 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Ath-006925|E3,U-box|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
GAAGGAAAAA AAAAAAAAAG ACAAAACACA AAGTGGAGGA GACCAAGCTG ACAAAACAAT 60
GTCCGAAACG GCTTAGAACG GCTTAAAACG CCAGCAAATT TCGATCTGAC CAATTGCAGA 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Ath-006925|E3,U-box|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0025--Alternative splicing
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0677--Repeat
KW-0808--Transferase
KW-0833--Ubl conjugation pathway
Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD
PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX
Pfam

PF00514--Arm
PF04564--U-box
SMART

SM00185--ARM
SM00504--Ubox
Gene Ontology

GO:0005634--C:nucleus
GO:0004842--F:ubiquitin-protein transferase activity
KEGG ath:AT2G23140
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000760 Aegilops tauschii 48.38 0.00e+00 643.00
IUUC-Atr-002793 Amborella trichopoda 53.60 0.00e+00 800.00
IUUC-Aly-006261 Arabidopsis lyrata 98.01 0.00e+00 1594.00
IUUC-Ago-007854 Ashbya gossypii 31.78 6.00e-16 78.60
IUUC-Afu-009117 Aspergillus fumigatus 30.68 2.00e-17 83.60
IUUC-Ame-010822 Astyanax mexicanus 27.83 9.00e-13 69.30
IUUC-Bdi-014751 Brachypodium distachyon 47.58 0.00e+00 655.00
IUUC-Bol-015762 Brassica oleracea 85.61 0.00e+00 1341.00
IUUC-Bra-018049 Brassica rapa 85.01 0.00e+00 1338.00
IUUC-Cja-019770 Callithrix jacchus 32.74 7.00e-10 57.40
IUUC-Ggr-039908 Gaeumannomyces graminis 33.33 4.00e-18 85.50
IUUC-Gma-043920 Glycine max 59.11 0.00e+00 880.00
IUUC-Hvu-047089 Hordeum vulgare 49.65 0.00e+00 699.00
IUUC-Lpe-051326 Leersia perrieri 50.90 0.00e+00 665.00
IUUC-Mor-056956 Magnaporthe oryzae 32.80 6.00e-17 81.60
IUUC-Mpo-057354 Magnaporthe poae 33.33 4.00e-18 85.50
IUUC-Mtr-057910 Medicago truncatula 58.13 0.00e+00 846.00
IUUC-Mac-064791 Musa acuminata 81.88 7.00e-135 473.00
IUUC-Nfi-068421 Neosartorya fischeri 30.68 2.00e-17 83.20
IUUC-Oba-075484 Oryza barthii 51.52 0.00e+00 644.00
IUUC-Obr-076317 Oryza brachyantha 51.35 0.00e+00 631.00
IUUC-Ogl-077857 Oryza glaberrima 51.52 0.00e+00 645.00
IUUC-Ogu-078826 Oryza glumaepatula 51.46 0.00e+00 647.00
IUUC-Oin-079538 Oryza indica 50.85 0.00e+00 645.00
IUUC-Olo-080425 Oryza longistaminata 50.43 1.00e-177 615.00
IUUC-Ome-081524 Oryza meridionalis 51.46 0.00e+00 647.00
IUUC-Oni-082077 Oryza nivara 50.85 0.00e+00 644.00
IUUC-Opu-083165 Oryza punctata 50.85 0.00e+00 657.00
IUUC-Oru-085180 Oryza rufipogon 51.46 0.00e+00 659.00
IUUC-Osa-085315 Oryza sativa 51.46 0.00e+00 659.00
IUUC-Ppa-095860 Physcomitrella patens 69.93 3.00e-109 389.00
IUUC-Pop-099220 Populus trichocarpa 65.45 0.00e+00 741.00
IUUC-Sja-107762 Schizosaccharomyces japonicus 29.63 9.00e-17 80.90
IUUC-Smo-108813 Selaginella moellendorffii 55.52 2.00e-86 313.00
IUUC-Sit-110349 Setaria italica 50.00 0.00e+00 679.00
IUUC-Sly-111082 Solanum lycopersicum 56.92 0.00e+00 839.00
IUUC-Stu-112751 Solanum tuberosum 56.62 0.00e+00 857.00
IUUC-Sbi-114085 Sorghum bicolor 72.91 2.00e-135 476.00
IUUC-Tca-121129 Theobroma cacao 66.01 0.00e+00 1018.00
IUUC-Tae-125641 Triticum aestivum 50.48 0.00e+00 694.00
IUUC-Tur-126525 Triticum urartu 45.86 0.00e+00 626.00
IUUC-Tbe-127244 Tupaia belangeri 26.97 5.00e-09 55.80
IUUC-Vvi-131364 Vitis vinifera 59.28 0.00e+00 882.00
Created Date 25-Jun-2017

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