iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bra-018049

Ensembl Protein ID

Bra039185.1-P

UniProt Accession

M4FDL4; M4FDL4_BRARP

Protein Name

RING-type E3 ubiquitin transferase

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Bra039185	Bra039185.1	Bra039185.1-P

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	8.30e-30	103.7	728	800

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceenss 74
           ++++f Cp+sle+M+dPv+++sG+ty+++ I++w++ g k cP+trq+lt+++l+Pn+t+++li +wce+n++
   Q: 728  ILADFFCPLSLEVMTDPVIVSSGQTYEKAFIKRWIDLGLKVCPKTRQTLTHTTLIPNYTVKALIANWCETNDV 800
           6789******************************************************************987 PP

Organism

Brassica rapa

Protein Sequence
(Fasta)

MSRLENDRPL LTERIYEELH AEEEEEETAY DEAEKVHIAS DDERDLEHGV GCGGAPPFSW 60
RKLWLFTGPG FLMSIAFLDP GNLEGDLQAG AIAGYSLLWL LMWATAMGLL VQLLSARLGV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCACGGC TCGAGAATGA TCGTCCGCTT CTAACCGAGA GAATCTACGA GGAGCTCCAC 60
GCAGAAGAAG AAGAAGAAGA GACGGCGTAC GACGAGGCGG AGAAAGTCCA CATCGCGAGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0808--Transferase
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR001046--NRAMP_fam
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF00514--Arm
PF01566--Nramp
PF04564--U-box

PRINTS

PR00447--NATRESASSCMP

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0005215--F:transporter activity
GO:0004842--F:ubiquitin-protein transferase activity

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000760	Aegilops tauschii	45.91	1.00e-176	613.00
IUUC-Atr-002793	Amborella trichopoda	72.00	2.00e-143	503.00
IUUC-Aly-006261	Arabidopsis lyrata	85.70	0.00e+00	1346.00
IUUC-Ath-006925	Arabidopsis thaliana	85.01	0.00e+00	1344.00
IUUC-Ame-010822	Astyanax mexicanus	28.70	1.00e-12	69.30
IUUC-Bdi-014197	Brachypodium distachyon	48.18	0.00e+00	655.00
IUUC-Bol-015762	Brassica oleracea	94.70	0.00e+00	1461.00
IUUC-Gma-043920	Glycine max	67.42	9.00e-138	484.00
IUUC-Hvu-047089	Hordeum vulgare	49.00	0.00e+00	676.00
IUUC-Lpe-051326	Leersia perrieri	49.76	0.00e+00	640.00
IUUC-Mtr-057910	Medicago truncatula	55.28	0.00e+00	788.00
IUUC-Oba-075484	Oryza barthii	50.00	2.00e-179	622.00
IUUC-Obr-076379	Oryza brachyantha	46.33	5.00e-175	607.00
IUUC-Ogl-077857	Oryza glaberrima	50.00	6.00e-180	624.00
IUUC-Ogu-078826	Oryza glumaepatula	50.12	1.00e-180	626.00
IUUC-Oin-079538	Oryza indica	50.12	0.00e+00	626.00
IUUC-Olo-080425	Oryza longistaminata	48.94	3.00e-171	595.00
IUUC-Ome-081524	Oryza meridionalis	50.00	0.00e+00	627.00
IUUC-Oni-082077	Oryza nivara	50.00	2.00e-180	625.00
IUUC-Opu-083165	Oryza punctata	50.80	0.00e+00	635.00
IUUC-Oru-085180	Oryza rufipogon	50.12	0.00e+00	639.00
IUUC-Osa-085315	Oryza sativa	50.00	0.00e+00	638.00
IUUC-Ppa-095522	Physcomitrella patens	65.55	2.00e-109	389.00
IUUC-Pop-099220	Populus trichocarpa	67.29	2.00e-152	531.00
IUUC-Sit-110349	Setaria italica	48.18	0.00e+00	646.00
IUUC-Sly-111082	Solanum lycopersicum	55.34	0.00e+00	782.00
IUUC-Stu-112751	Solanum tuberosum	53.77	0.00e+00	787.00
IUUC-Sbi-114085	Sorghum bicolor	70.60	1.00e-130	460.00
IUUC-Tca-121129	Theobroma cacao	61.67	0.00e+00	915.00
IUUC-Tae-125641	Triticum aestivum	48.42	0.00e+00	669.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence