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Basic Information Integrated Annotations

Tag Content
iUUCD ID IUUC-Ath-007206
UUCD1 version UUC-ArT-00367
Ensembl Protein ID AT2G24540.1
UniProt Accession Q8LAW2; Q9SJB1; AFR_ARATH
Genbank Protein ID AAD23891.1; AEC07590.1; AAL57704.1; AAN38684.1; AAM65112.1
Protein Name F-box protein AFR; Protein ATTENUATED FAR-RED RESPONSE; SKP1-interacting partner 29
Genbank Nucleotide ID AC006954; CP002685; AY072009; BT000847; AY087570
Gene Name AFR; SKIP29; At2g24540; F25P17.16
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT2G24540 AT2G24540.1 AT2G24540.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
iRefIndexPINAHINTMentha
Protein Expression/Proteomics
Status Reviewed
Details
Family Domain References (PMIDs)
E3 adaptor/Cullin RING/SCF/F-box F-box 14653999; 15579807
Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description



     Component of SCF (ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Part of the phyA-mediated signaling transduction pathway leading to the regulation of gene expression and hypocotyls elongation in response to red and far-red light exposure.
Component of SCF (ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Part of the phyA-mediated signaling transduction pathway leading to the regulation of gene expression and hypocotyls elongation in response to red and far-red light exposure.
Protein Sequence
(Fasta)
MAEQETTSNI NTINDQAEEE TRTKSQPLIS GLPNDIAELC LLRLPYPYHA LYRSVSSSWN 60
KTITNPRFLF SKQSLSISSP YLFVFAFNKS TARIQWQSLD LASGRWFVLP PMPNSFTKIS 120
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Protein Fasta Sequence



>IUUC-Ath-007206|E3,F-box|Arabidopsis thaliana
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Nucleotide Sequence
(Fasta)
GGATTTGATT TCTTTTCCCA AACTTTAACA TTTTATATCT AAAACCATTT CATCTTATGA 60
ATATCAACAA CAATGGCAGA ACAAGAAACT ACGTCAAACA TAAACACCAT TAATGATCAA 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Ath-007206|E3,F-box|Arabidopsis thaliana
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Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0880--Kelch repeat
KW-0607--Phytochrome signaling pathway
KW-1185--Reference proteome
KW-0677--Repeat
KW-0833--Ubl conjugation pathway

Interpro

IPR001810--F-box_dom
IPR015915--Kelch-typ_b-propeller
IPR006652--Kelch_1

Pfam

PF00646--F-box
PF01344--Kelch_1

SMART

SM00256--FBOX
SM00612--Kelch

Gene Ontology

GO:0016567--P:protein ubiquitination
GO:0010017--P:red or far-red light signaling pathway
GO:0009585--P:red, far-red light phototransduction

KEGG ath:AT2G24540
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aly-005884 Arabidopsis lyrata 90.56 0.00e+00 687.00
IUUC-Bol-015710 Brassica oleracea 80.27 2.00e-179 620.00
IUUC-Bra-017373 Brassica rapa 82.57 5.00e-175 605.00
IUUC-Gma-043190 Glycine max 47.59 5.00e-93 333.00
IUUC-Mtr-058413 Medicago truncatula 43.02 1.00e-78 286.00
IUUC-Mvi-060271 Microbotryum violaceum 46.15 6.80e-01 28.10
IUUC-Mac-064614 Musa acuminata 40.06 9.00e-58 216.00
IUUC-Oan-072938 Ornithorhynchus anatinus 23.81 3.00e-13 69.70
IUUC-Ppa-095249 Physcomitrella patens 26.28 1.00e-27 116.00
IUUC-Pop-099996 Populus trichocarpa 54.12 2.00e-115 408.00
IUUC-Ppe-101313 Prunus persica 54.37 1.00e-82 298.00
IUUC-Pyt-104553 Pyrenophora triticirepentis 30.43 7.00e-05 41.60
IUUC-Tca-121019 Theobroma cacao 59.07 2.00e-129 454.00
IUUC-Tme-126968 Tuber melanosporum 32.61 8.60e-02 30.40
IUUC-Vvi-131208 Vitis vinifera 53.31 8.00e-101 359.00
Created Date 25-Jun-2017

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