iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-006909

Ensembl Protein ID

AT2G26490.1

UniProt Accession

O48716; JGB_ARATH

Genbank Protein ID

AAC14498.1; AEC07844.1; AAT71958.1; AAU95436.1

Protein Name

Protein JINGUBANG

Genbank Nucleotide ID

AC002505; CP002685; BT015086; BT015900

Gene Name

JGB; At2g26490; T9J22.16

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT2G26490	AT2G26490.1	AT2G26490.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.60e-29	101.5	205	242
UBD/Beta-Prp	4.40e-48	164.9	102	346

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           H+d v+cl++ ++ +ll s+s+D tikvW++ + ++l 
   Q: 205  HADAVSCLSLnDEqGLLYSASWDRTIKVWRIADSKCLE 242
           9*********6559****************99999985 PP

UBD/Beta-Prp

   S: 16   vkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdls............................... 82
           ++    k+ll tgs+++ i+vw++ +   ++ ++ +++ v+a+ +s +   + tg++D+ i+vw +s                               
   Q: 102  LAA--TKDLLYTGSDSKNIRVWKNLK--EFSAFKCNSGLVKAIVISGE--KIFTGHQDGKIRVWKVSpknqslhkrsgtlptlkdifkaslkprnyve 193
           444..899****************99..5689***************9..69************88888999**********************9999 PP
   S: 83   .tgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdl......ktgkllr 173
            +   +  + +h d v +ls++ ++  l s+s+drti+vw +   +cle     hd++vn+vv+   + +++sGs+D+tv+ W+          +l++
   Q: 194  vKKHRTALWIKHADAVSCLSLNDEQGLLYSASWDRTIKVWRIADSKCLE-SIPAHDDAVNSVVSTT-EAIVFSGSADGTVKAWKRdqqgkyTKHTLMQ 289
           86666666667**************************************.6666777777776655.69*****************99999999**** PP
   S: 174  tltgghtdsvyslsfdsngkelvsgsldgtvklwdlq.tgecvrtlnghtdnvksvrf 230
           tlt+ ++++v+ l++++ng  +  gs dg v++w+ + + +   +l+gh+  v+++++
   Q: 290  TLTK-QESAVTALAVSKNGAAVYFGSSDGLVNFWEREkQLNYGGILKGHKLAVLCLEV 346
           ***9.******************************99444557899999999999876 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Negative regulator of pollen germination (PubMed:27468890). Prevents pollination in moist environments by inhibiting jasmonic acid synthesis (PubMed:27468890). Stabilizes pollen tube growth (PubMed:27468890).

Protein Sequence
(Fasta)

MFTEADSIPR AKYANMMHSD PNLSSTMTQQ TEEEYGIRNS SASAVGTGMY DRMSCEGSPM 60
MMSPWNQATP FTQTQWSTVE ENLPQNGLIG SLVREEGHIY SLAATKDLLY TGSDSKNIRV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCTGCCACAA CTATATTTGC ATCACCCCAT TGTTCTTAAG CTAAAACCAA ACCCCTTTCA 60
ATCTCAAATC TAATTTTAAA TCTACCTTTT CTTTTGTTTT TTTCTCTCCT CACAAATTAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR020472--G-protein_beta_WD-40_rep
IPR027295--Quinoprotein_ADH-like_fam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0009846--P:pollen germination

KEGG

ath:AT2G26490

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001063	Aegilops tauschii	36.76	2.00e-46	179.00
IUUC-Atr-002457	Amborella trichopoda	63.98	1.00e-161	562.00
IUUC-Bdi-014024	Brachypodium distachyon	58.69	5.00e-131	460.00
IUUC-Bra-017125	Brassica rapa	94.22	0.00e+00	834.00
IUUC-Gma-043481	Glycine max	66.74	2.00e-168	584.00
IUUC-Hvu-047445	Hordeum vulgare	58.41	2.00e-130	458.00
IUUC-Lpe-051623	Leersia perrieri	56.19	2.00e-126	445.00
IUUC-Mtr-057641	Medicago truncatula	70.64	2.00e-173	601.00
IUUC-Oba-075783	Oryza barthii	58.00	4.00e-131	461.00
IUUC-Obr-076198	Oryza brachyantha	56.40	2.00e-128	451.00
IUUC-Ogl-077280	Oryza glaberrima	58.00	4.00e-131	461.00
IUUC-Ogu-078924	Oryza glumaepatula	58.00	2.00e-132	464.00
IUUC-Oin-079931	Oryza indica	58.00	3.00e-131	461.00
IUUC-Olo-080744	Oryza longistaminata	60.05	2.00e-109	388.00
IUUC-Oni-082948	Oryza nivara	58.00	3.00e-131	461.00
IUUC-Opu-083881	Oryza punctata	58.07	4.00e-131	460.00
IUUC-Oru-084999	Oryza rufipogon	58.00	3.00e-131	461.00
IUUC-Osa-085749	Oryza sativa	58.00	3.00e-131	461.00
IUUC-Pop-099814	Populus trichocarpa	72.79	0.00e+00	632.00
IUUC-Ppe-101858	Prunus persica	70.23	3.00e-178	617.00
IUUC-Sit-109859	Setaria italica	61.70	8.00e-122	429.00
IUUC-Sly-111122	Solanum lycopersicum	67.15	8.00e-158	549.00
IUUC-Stu-112301	Solanum tuberosum	64.94	6.00e-159	553.00
IUUC-Sbi-114260	Sorghum bicolor	61.38	2.00e-129	455.00
IUUC-Tca-121208	Theobroma cacao	74.00	0.00e+00	631.00
IUUC-Tae-123171	Triticum aestivum	45.51	2.00e-102	365.00
IUUC-Tur-126539	Triticum urartu	58.39	3.00e-91	327.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence