iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099814

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000338

Gene Name

POPTRDRAFT_412777; POPTR_0002s13190g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0002s13190	POPTR_0002s13190.1	POPTR_0002s13190.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.80e-30	104.7	201	238
UBD/Beta-Prp	9.20e-43	147.6	201	423

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           H d ++cl +  d tll s+s+D t kvW++++ ++l 
   Q: 201  HCDAISCLTLsEDkTLLYSASWDRTFKVWRISDSRCLE 238
           99********8668*****************9999986 PP

UBD/Beta-Prp

   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvw......dlstgkcvhtlkgh 93
           h + i+c++ s+dk+ll ++s+d+t kvw++++  +l+s+  h+++v++v  s +g +  tgs D+t+kvw         + ++v+tl ++
   Q: 201  HCDAISCLTLSEDKTLLYSASWDRTFKVWRISDSRCLESINAHDDAVNSVVASLEG-LVFTGSADGTVKVWkreqqgKTTKHSPVQTLLKQ 290
           67889**************************************************9.**************665555555999******** PP
   S: 94   edsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdl..ktgkllrtltgghtds 182
           e+ v+sl+++ sg+++  Gs+d +++ w+ e++     +l+gh+ +v c++  +  nl++sGs+D+t+ +W+   k   ++  ltg ht++
   Q: 291  ESAVTSLAVNTSGSVVYCGSSDGMVNYWECEKQLSHGGVLKGHKLAVLCLAAAG--NLVFSGSADKTICVWRRdgKLHACISVLTG-HTGP 378
           ****************************9999888888*************999..***************8777**********9.**** PP
   S: 183  vysls.....fdsng.......kelvsgsldgtvklwdlq.......t 211
           v++l+         +         + sgsld++vk+w++        +
   Q: 379  VKCLAvevdhE---KskdgdqrWVVYSGSLDKSVKVWSVAemapdlyQ 423
           *****775540...3555566566779***********9855444433 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

NHTPRSKFGN MMHSDPNLSA TAAAIPRDEV FGYRNSSASL TGPASFDPNR MSCEGSPMTM 60
SPWNQTGGGS NFPWSFEENL PQNGLIGSLV REEGHIYSLA ATKDLLYTGS DSKNIRVWKN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AACCATACGC CGAGATCGAA ATTCGGTAAC ATGATGCATT CTGATCCAAA CCTTTCAGCA 60
ACAGCAGCGG CAATACCCCG TGATGAAGTG TTCGGCTATC GAAATAGCAG TGCTTCCTTA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

KEGG

pop:POPTR_0002s13190g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ath-006909	Arabidopsis thaliana	72.79	0.00e+00	632.00
IUUC-Bra-017125	Brassica rapa	73.12	1.00e-179	622.00
IUUC-Mac-065282	Musa acuminata	58.74	8.00e-112	395.00
IUUC-Oin-079931	Oryza indica	60.04	5.00e-136	477.00
IUUC-Oni-082948	Oryza nivara	60.04	5.00e-136	477.00
IUUC-Opu-083881	Oryza punctata	59.87	3.00e-134	471.00
IUUC-Oru-084999	Oryza rufipogon	60.04	5.00e-136	477.00
IUUC-Osa-085749	Oryza sativa	60.04	5.00e-136	477.00
IUUC-Ppe-101858	Prunus persica	74.76	0.00e+00	629.00
IUUC-Sly-111122	Solanum lycopersicum	69.05	1.00e-159	555.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence