iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Aly-006566

Ensembl Protein ID

fgenesh1_pm.C_scaffold_4000727

UniProt Accession

D7LK90; D7LK90_ARALL

Genbank Protein ID

EFH57272.1

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

GL348716

Gene Name

PUB12; ARALYDRAFT_320670

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
fgenesh1_pm.C_scaffold_4000727	fgenesh1_pm.C_scaffold_4000727	fgenesh1_pm.C_scaffold_4000727

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	4.20e-33	113.9	254	326

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceenss 74
           +pe+f+CpIslelM+dPv+++sG+ty+r++I+kwl+ g+ tcP+t+++lt+++++Pn++lr+li +wce+n++
   Q: 254  PPEDFRCPISLELMTDPVIVSSGQTYERECIKKWLEGGHLTCPKTQETLTSDTVTPNYVLRSLIAQWCESNGI 326
           69********************************************************************987 PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MAKSEKHKLA QTLIDSINEI ASISDHHTPM KKHCGNLSRR LKLLIPMLEE IRDNQESSSE 60
VVKALLSLKE SLVPAKDLLS FVSQVSKIYL VLERDQVMVK FQKVTALLEQ ALSGIPYENL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCGAAAT CAGAGAAACA CAAGTTAGCG CAAACCTTAA TCGATTCAAT AAACGAGATC 60
GCTTCAATTT CCGATCACCA CACACCGATG AAGAAGCACT GCGGAAACCT CTCTCGGCGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR011987--ATPase_V1-cplx_hsu_C
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF00514--Arm
PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity

KEGG

aly:ARALYDRAFT_320670

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001147	Aegilops tauschii	62.90	0.00e+00	636.00
IUUC-Ath-007469	Arabidopsis thaliana	90.12	0.00e+00	993.00
IUUC-Bol-015915	Brassica oleracea	78.13	0.00e+00	933.00
IUUC-Bra-016811	Brassica rapa	79.12	0.00e+00	938.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence