iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-006683

Ensembl Protein ID

AT2G30910.1

UniProt Accession

O80856; ARC1A_ARATH

Genbank Protein ID

AAC20725.1; AEC08455.1; AEC08457.1; AAO42862.1; BAE99541.1

Protein Name

Actin-related protein 2/3 complex subunit 1A; Actin-related protein C1; Actin-related protein C1A; Arp2/3 complex 41 kDa subunit; p41-ARC

Genbank Nucleotide ID

AC004669; CP002685; CP002685; BT004616; AK227543

Gene Name

ARPC1A; At2g30910; F7F1.12

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT2G30910	AT2G30910.1	AT2G30910.1
AT2G30910	AT2G30910.2	AT2G30910.2

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
HINT	Mentha
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.90e-16	60.4	144	173

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWD 29
           H++svt++a+ ++  ll++ s Dg+++v++
   Q: 144  HESSVTSVAWhPNnVLLATTSTDGKCRVFS 173
           9**********66699************97 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Arp2/3 complex plays a critical role in the control of cell morphogenesis via the modulation of cell polarity development.

Protein Sequence
(Fasta)

MAVVDVHRFA ESITCHAWSP DLSMVALCPN NTEVHIYKSL SQDHWERLHV LQKHDQIVSG 60
IDWSSKSNKI VTVSHDRNSY VWSLEGAEWV PTLVILRLNR AALCVQWSPK ENKFAVGSGA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTTTGCCCAA AAATAAAGGT CCAAGTAAAA CTGAAATTGA TCTGGTCATA AAAATTGGGG 60
CTTTAGTAAA AAAAAAAAAA AAAAAAAAAA CATCTGTCTC TTTCACTTCA CGTTTGCGAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0009--Actin-binding
KW-0025--Alternative splicing
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR024977--Apc4_WD40_dom
IPR017383--ARPC1
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12894--ANAPC4_WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005885--C:Arp2/3 protein complex
GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0051015--F:actin filament binding
GO:0007015--P:actin filament organization
GO:0034314--P:Arp2/3 complex-mediated actin nucleation

KEGG

ath:AT2G30910

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001709	Ailuropoda melanoleuca	41.82	1.00e-79	289.00
IUUC-Apl-003325	Anas platyrhynchos	42.25	3.00e-79	287.00
IUUC-Aca-004736	Anolis carolinensis	41.98	8.00e-79	286.00
IUUC-Aly-005532	Arabidopsis lyrata	96.83	0.00e+00	734.00
IUUC-Ago-007966	Ashbya gossypii	33.51	1.00e-53	202.00
IUUC-Acl-008334	Aspergillus clavatus	37.99	2.00e-64	238.00
IUUC-Afl-008485	Aspergillus flavus	37.84	1.00e-60	227.00
IUUC-Afu-008780	Aspergillus fumigatus	37.83	4.00e-64	237.00
IUUC-Ani-009417	Aspergillus nidulans	39.31	7.00e-64	236.00
IUUC-Ang-009543	Aspergillus niger	38.89	4.00e-64	237.00
IUUC-Aor-010234	Aspergillus oryzae	38.10	8.00e-64	236.00
IUUC-Ate-010386	Aspergillus terreus	38.27	6.00e-62	230.00
IUUC-Ame-011512	Astyanax mexicanus	41.73	6.00e-81	293.00
IUUC-Bgr-012192	Blumeria graminis	35.47	1.00e-57	216.00
IUUC-Bta-012442	Bos taurus	40.92	2.00e-77	282.00
IUUC-Bci-013616	Botrytis cinerea	37.87	6.00e-60	223.00
IUUC-Bdi-014632	Brachypodium distachyon	72.04	2.00e-160	557.00
IUUC-Bol-016274	Brassica oleracea	93.44	0.00e+00	713.00
IUUC-Bra-016790	Brassica rapa	93.18	0.00e+00	704.00
IUUC-Cel-018122	Caenorhabditis elegans	39.66	3.00e-64	238.00
IUUC-Cja-019362	Callithrix jacchus	41.64	1.00e-76	279.00
IUUC-Cfa-020167	Canis familiaris	41.64	9.00e-77	280.00
IUUC-Cpo-022461	Cavia porcellus	41.73	1.00e-79	289.00
IUUC-Cre-022590	Chlamydomonas reinhardtii	40.84	2.00e-40	157.00
IUUC-Csa-023277	Chlorocebus sabaeus	41.02	3.00e-76	278.00
IUUC-Cho-024449	Choloepus hoffmanni	26.75	3.00e-17	82.00
IUUC-Cin-025186	Ciona intestinalis	35.99	6.00e-61	227.00
IUUC-Csv-026275	Ciona savignyi	35.99	5.00e-62	230.00
IUUC-Cgl-026732	Colletotrichum gloeosporioides	35.11	2.00e-55	208.00
IUUC-Cne-026926	Cryptococcus neoformans	36.97	1.00e-69	256.00
IUUC-Dre-028141	Danio rerio	41.19	1.00e-81	296.00
IUUC-Dno-029092	Dasypus novemcinctus	42.47	3.00e-75	275.00
IUUC-Dor-030559	Dipodomys ordii	41.08	1.00e-78	285.00
IUUC-Dse-031574	Dothistroma septosporum	37.63	1.00e-63	236.00
IUUC-Dme-031907	Drosophila melanogaster	37.87	2.00e-64	238.00
IUUC-Ete-032299	Echinops telfairi	42.74	4.00e-81	294.00
IUUC-Eca-033593	Equus caballus	41.73	4.00e-80	290.00
IUUC-Eeu-035041	Erinaceus europaeus	30.58	3.00e-17	82.00
IUUC-Fca-036254	Felis catus	41.89	2.00e-79	288.00
IUUC-Fal-037453	Ficedula albicollis	41.89	1.00e-81	295.00
IUUC-Fox-037842	Fusarium oxysporum	36.70	1.00e-61	229.00
IUUC-Fso-038276	Fusarium solani	37.23	7.00e-61	226.00
IUUC-Gmo-039673	Gadus morhua	39.95	2.00e-73	268.00
IUUC-Ggr-039762	Gaeumannomyces graminis	37.77	2.00e-59	221.00
IUUC-Gga-040898	Gallus gallus	43.24	2.00e-81	295.00
IUUC-Gac-042531	Gasterosteus aculeatus	39.43	2.00e-73	268.00
IUUC-Gma-042803	Glycine max	77.19	6.00e-166	575.00
IUUC-Ggo-045355	Gorilla gorilla	30.19	2.00e-42	165.00
IUUC-Hsa-046623	Homo sapiens	41.62	6.00e-79	286.00
IUUC-Hvu-047456	Hordeum vulgare	63.13	2.00e-62	230.00
IUUC-Itr-048596	Ictidomys tridecemlineatus	42.01	2.00e-80	291.00
IUUC-Kpa-049288	Komagataella pastoris	36.59	1.00e-51	196.00
IUUC-Lch-049679	Latimeria chalumnae	42.28	4.00e-80	290.00
IUUC-Lpe-050869	Leersia perrieri	71.12	2.00e-156	544.00
IUUC-Loc-052140	Lepisosteus oculatus	41.73	4.00e-76	277.00
IUUC-Lma-053109	Leptosphaeria maculans	38.10	1.00e-62	233.00
IUUC-Laf-054271	Loxodonta africana	41.98	3.00e-76	277.00
IUUC-Mcc-054857	Macaca mulatta	42.39	6.00e-75	273.00
IUUC-Meu-056302	Macropus eugenii	43.24	3.00e-83	301.00
IUUC-Mor-057167	Magnaporthe oryzae	38.13	3.00e-60	224.00
IUUC-Mtr-057659	Medicago truncatula	77.72	2.00e-171	594.00
IUUC-Mla-058886	Melampsora laricipopulina	38.81	5.00e-71	260.00
IUUC-Mga-059279	Meleagris gallopavo	43.24	1.00e-81	296.00
IUUC-Mvi-060302	Microbotryum violaceum	36.54	6.00e-67	247.00
IUUC-Mmr-060752	Microcebus murinus	41.76	5.00e-79	287.00
IUUC-Mdo-062326	Monodelphis domestica	41.91	2.00e-77	282.00
IUUC-Mmu-064099	Mus musculus	41.94	7.00e-81	293.00
IUUC-Mac-064632	Musa acuminata	75.27	9.00e-165	572.00
IUUC-Mpu-066247	Mustela putorius furo	41.19	2.00e-78	285.00
IUUC-Mlu-067571	Myotis lucifugus	42.01	6.00e-80	290.00
IUUC-Nfi-068383	Neosartorya fischeri	38.10	8.00e-65	239.00
IUUC-Ncr-068777	Neurospora crassa	35.81	7.00e-59	220.00
IUUC-Nle-069900	Nomascus leucogenys	41.64	1.00e-76	279.00
IUUC-Opr-070386	Ochotona princeps	37.70	2.00e-61	229.00
IUUC-Ont-071283	Oreochromis niloticus	39.95	1.00e-73	269.00
IUUC-Oan-072692	Ornithorhynchus anatinus	43.84	2.00e-81	295.00
IUUC-Ocu-074187	Oryctolagus cuniculus	41.46	1.00e-81	296.00
IUUC-Oba-075379	Oryza barthii	71.66	1.00e-157	548.00
IUUC-Obr-076404	Oryza brachyantha	70.97	4.00e-158	550.00
IUUC-Ogl-077409	Oryza glaberrima	68.28	3.00e-151	527.00
IUUC-Ogu-078759	Oryza glumaepatula	71.66	2.00e-157	548.00
IUUC-Oin-079118	Oryza indica	70.97	1.00e-158	551.00
IUUC-Olo-081055	Oryza longistaminata	72.33	7.00e-137	479.00
IUUC-Ome-081281	Oryza meridionalis	71.39	4.00e-157	546.00
IUUC-Oni-083043	Oryza nivara	71.66	1.00e-157	548.00
IUUC-Opu-083392	Oryza punctata	60.22	3.00e-125	440.00
IUUC-Oru-084839	Oryza rufipogon	71.66	1.00e-157	548.00
IUUC-Osa-085377	Oryza sativa	71.24	4.00e-159	553.00
IUUC-Ola-087274	Oryzias latipes	41.44	5.00e-74	270.00
IUUC-Oga-088610	Otolemur garnettii	41.73	4.00e-80	290.00
IUUC-Oar-089613	Ovis aries	41.91	6.00e-77	280.00
IUUC-Ptr-091023	Pan troglodytes	41.62	6.00e-79	286.00
IUUC-Pan-091727	Papio anubis	41.89	7.00e-80	290.00
IUUC-Psi-093767	Pelodiscus sinensis	41.71	1.00e-78	285.00
IUUC-Pma-094124	Petromyzon marinus	41.32	7.00e-82	296.00
IUUC-Pno-095031	Phaeosphaeria nodorum	37.30	3.00e-62	231.00
IUUC-Ppa-095738	Physcomitrella patens	59.95	7.00e-133	466.00
IUUC-Pfo-097107	Poecilia formosa	41.21	9.00e-75	273.00
IUUC-Pab-098238	Pongo abelii	41.07	4.00e-79	287.00
IUUC-Pop-098954	Populus trichocarpa	79.78	2.00e-122	430.00
IUUC-Pca-100580	Procavia capensis	41.89	1.00e-78	286.00
IUUC-Ppe-101681	Prunus persica	76.68	3.00e-172	597.00
IUUC-Pva-102928	Pteropus vampyrus	39.78	5.00e-74	270.00
IUUC-Pgr-103309	Puccinia graminis	40.81	6.00e-72	263.00
IUUC-Ptt-103959	Puccinia triticina	39.01	2.00e-69	255.00
IUUC-Pte-104384	Pyrenophora teres	38.54	8.00e-60	223.00
IUUC-Pyt-104686	Pyrenophora triticirepentis	38.54	8.00e-60	223.00
IUUC-Rno-104846	Rattus norvegicus	41.46	9.00e-80	289.00
IUUC-Sce-106411	Saccharomyces cerevisiae	34.38	2.00e-52	199.00
IUUC-Sha-106691	Sarcophilus harrisii	41.91	3.00e-77	281.00
IUUC-Sja-107792	Schizosaccharomyces japonicus	36.05	3.00e-60	224.00
IUUC-Spo-108053	Schizosaccharomyces pombe	35.52	2.00e-56	211.00
IUUC-Ssl-108606	Sclerotinia sclerotiorum	37.87	3.00e-60	224.00
IUUC-Smo-108836	Selaginella moellendorffii	60.48	6.00e-139	486.00
IUUC-Sit-110150	Setaria italica	71.16	1.00e-160	558.00
IUUC-Sly-111048	Solanum lycopersicum	75.20	4.00e-168	583.00
IUUC-Sar-113404	Sorex araneus	48.75	8.00e-65	239.00
IUUC-Sbi-114685	Sorghum bicolor	68.28	1.00e-147	515.00
IUUC-Ssc-115851	Sus scrofa	41.98	3.00e-76	278.00
IUUC-Tgu-116701	Taeniopygia guttata	42.25	1.00e-79	289.00
IUUC-Tru-117603	Takifugu rubripes	40.85	1.00e-75	276.00
IUUC-Tsy-119515	Tarsius syrichta	55.86	5.00e-42	164.00
IUUC-Tni-119844	Tetraodon nigroviridis	40.79	7.00e-74	270.00
IUUC-Tca-121645	Theobroma cacao	80.21	2.00e-172	597.00
IUUC-Tre-122045	Trichoderma reesei	37.53	2.00e-60	225.00
IUUC-Tvi-122523	Trichoderma virens	37.70	1.00e-60	226.00
IUUC-Tae-125810	Triticum aestivum	64.01	4.00e-151	526.00
IUUC-Tur-126640	Triticum urartu	67.86	1.00e-143	502.00
IUUC-Tme-127018	Tuber melanosporum	36.90	1.00e-52	199.00
IUUC-Ttr-128698	Tursiops truncatus	41.73	2.00e-79	288.00
IUUC-Uma-129423	Ustilago maydis	43.88	2.00e-63	235.00
IUUC-Vda-129706	Verticillium dahliae	35.45	7.00e-57	213.00
IUUC-Vvi-131647	Vitis vinifera	79.14	7.00e-172	595.00
IUUC-Xtr-131893	Xenopus tropicalis	41.29	2.00e-77	282.00
IUUC-Xma-133435	Xiphophorus maculatus	41.21	9.00e-75	273.00
IUUC-Yli-134471	Yarrowia lipolytica	37.97	7.00e-59	220.00
IUUC-Zma-135615	Zea mays	68.48	3.00e-158	550.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence