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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Ath-006652
Ensembl Protein ID AT2G34260.1
UniProt Accession O80775; F4IGY3; WDR55_ARATH
Genbank Protein ID AAC27402.2; AEC08945.1; AEC08946.1; BAC42145.1; AAO63858.1; AAM65204.1
Protein Name WD repeat-containing protein 55; Protein WD repeat domain 55; Protein WDR55 homolog
Genbank Nucleotide ID AC004481; CP002685; CP002685; AK117481; BT005438; AY087666
Gene Name WDR55; At2g34260
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT2G34260 AT2G34260.2 AT2G34260.2
AT2G34260 AT2G34260.1 AT2G34260.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
iRefIndexHINT
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB
Status Reviewed
Details
Family Domain References (PMIDs)
E3 adaptor/Cullin RING/DCX/DWD WD_repeat 22447688; 23803743
Classification
Family E-value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 3.00e-20 72.4 93 128
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 2    Htdsvtclaf..sdtllvsGsdDgtikvWDlrtgvll 36
           H+d v+ l    ++t+++sG d g +k+WD+r+  + 
   Q: 93   HEDAVNTL-InvTETTIASGDDKGCVKIWDTRQRSCS 128
           99999998.664669***************9988776 PP
   
Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description


     Required for male and female gametogenesis, seed development, and embryo and endosperm development at early stages. Involved in the establishment of bilateral symmetry in the transition from the globular to the heart embryo stage. May act in the frame of a CRL4 complex (PubMed:22447688). Required for proper vegetative growth and organization of the adult plant body. May play a role in hormonal control of plant development (PubMed:23803743).
 Required for male and female gametogenesis, seed development, and embryo and endosperm development at early stages. Involved in the establishment of bilateral symmetry in the transition from the globular to the heart embryo stage. May act in the frame of a CRL4 complex (PubMed:22447688). Required for proper vegetative growth and organization of the adult plant body. May play a role in hormonal control of plant development (PubMed:23803743).
Protein Sequence
(Fasta)
MEIDLGANAF GIDFHPSTNL VAAGLIDGHL HLYRYDSDSS LVRERKVRAH KESCRAVRFI 60
DDGQRIVTAS ADCSILATDV ETGAQVAHLE NAHEDAVNTL INVTETTIAS GDDKGCVKIW 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Ath-006652|E3,WD_repeat|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
GATATTTCTT GAGAACGAGA GATGGTATTA GTTCTTTTGC CACCGACGAG AAGAGAATAA 60
AGCTTTGAGC TCGTAGCGTT CTCTAGGCTA AACTTTTAAA AACACTCTCC ATAAAAACTT 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Ath-006652|E3,WD_repeat|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0025--Alternative splicing
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0217--Developmental protein
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat
Interpro

IPR024977--Apc4_WD40_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR017422--WDR55
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF12894--ANAPC4_WD40
PF00400--WD40
SMART

SM00320--WD40
Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0009855--P:determination of bilateral symmetry
GO:0080186--P:developmental vegetative growth
GO:0009793--P:embryo development ending in seed dormancy
GO:0009553--P:embryo sac development
GO:0009960--P:endosperm development
GO:0010197--P:polar nucleus fusion
GO:0042273--P:ribosomal large subunit biogenesis
GO:0006364--P:rRNA processing
KEGG ath:AT2G34260
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000562 Aegilops tauschii 52.99 2.00e-97 348.00
IUUC-Aml-001768 Ailuropoda melanoleuca 39.66 9.00e-59 221.00
IUUC-Atr-002764 Amborella trichopoda 57.42 1.00e-49 187.00
IUUC-Apl-003880 Anas platyrhynchos 38.46 6.00e-46 178.00
IUUC-Aca-005060 Anolis carolinensis 40.41 6.00e-58 218.00
IUUC-Aly-006484 Arabidopsis lyrata 88.98 4.00e-157 546.00
IUUC-Acl-008007 Aspergillus clavatus 24.56 1.00e-13 70.10
IUUC-Afl-008723 Aspergillus flavus 25.51 4.00e-18 85.10
IUUC-Ang-009610 Aspergillus niger 27.90 3.00e-12 65.90
IUUC-Aor-009953 Aspergillus oryzae 25.51 4.00e-18 85.10
IUUC-Ate-010258 Aspergillus terreus 25.91 2.00e-13 69.30
IUUC-Bgr-012123 Blumeria graminis 23.64 2.00e-12 66.20
IUUC-Bta-013497 Bos taurus 39.32 7.00e-59 220.00
IUUC-Bci-013623 Botrytis cinerea 25.36 3.00e-14 72.40
IUUC-Bdi-014378 Brachypodium distachyon 57.95 2.00e-103 367.00
IUUC-Bol-016352 Brassica oleracea 91.29 8.00e-169 585.00
IUUC-Bra-017819 Brassica rapa 84.99 9.00e-167 578.00
IUUC-Cja-018792 Callithrix jacchus 38.31 1.00e-57 216.00
IUUC-Cfa-020739 Canis familiaris 39.66 7.00e-59 221.00
IUUC-Cpo-022331 Cavia porcellus 39.32 1.00e-58 219.00
IUUC-Cre-022921 Chlamydomonas reinhardtii 49.21 4.00e-47 179.00
IUUC-Csa-023414 Chlorocebus sabaeus 38.31 7.00e-58 217.00
IUUC-Cho-024600 Choloepus hoffmanni 37.29 3.00e-54 204.00
IUUC-Cin-025565 Ciona intestinalis 31.85 4.00e-42 164.00
IUUC-Csv-026294 Ciona savignyi 33.68 7.00e-43 167.00
IUUC-Cne-026979 Cryptococcus neoformans 32.88 2.00e-41 162.00
IUUC-Cme-027192 Cyanidioschyzon merolae 28.99 7.00e-20 90.90
IUUC-Dre-028492 Danio rerio 37.33 9.00e-50 190.00
IUUC-Dno-030050 Dasypus novemcinctus 38.59 3.00e-54 206.00
IUUC-Dor-030386 Dipodomys ordii 34.01 1.00e-43 169.00
IUUC-Dme-032012 Drosophila melanogaster 32.65 5.00e-44 171.00
IUUC-Ete-032491 Echinops telfairi 39.32 5.00e-58 217.00
IUUC-Eca-033583 Equus caballus 39.66 3.00e-60 226.00
IUUC-Eeu-034976 Erinaceus europaeus 40.65 3.00e-51 194.00
IUUC-Fca-036417 Felis catus 40.68 2.00e-60 225.00
IUUC-Fso-038425 Fusarium solani 25.09 7.00e-14 70.90
IUUC-Gmo-039505 Gadus morhua 36.95 5.00e-54 204.00
IUUC-Ggr-039978 Gaeumannomyces graminis 31.02 1.00e-20 93.20
IUUC-Gga-040732 Gallus gallus 37.63 3.00e-52 198.00
IUUC-Gac-041313 Gasterosteus aculeatus 36.42 1.00e-53 202.00
IUUC-Gma-044122 Glycine max 71.61 9.00e-133 465.00
IUUC-Ggo-044748 Gorilla gorilla 38.31 2.00e-58 218.00
IUUC-Hsa-046943 Homo sapiens 37.97 1.00e-57 216.00
IUUC-Hvu-047659 Hordeum vulgare 58.84 8.00e-106 376.00
IUUC-Itr-048110 Ictidomys tridecemlineatus 39.32 3.00e-59 221.00
IUUC-Lch-050331 Latimeria chalumnae 34.15 1.00e-41 162.00
IUUC-Lpe-051193 Leersia perrieri 62.80 2.00e-110 391.00
IUUC-Loc-051946 Lepisosteus oculatus 38.16 3.00e-55 209.00
IUUC-Lma-052960 Leptosphaeria maculans 29.64 8.00e-21 94.40
IUUC-Laf-054035 Loxodonta africana 39.66 6.00e-60 223.00
IUUC-Mcc-055285 Macaca mulatta 42.28 6.00e-26 109.00
IUUC-Meu-056596 Macropus eugenii 38.31 2.00e-56 211.00
IUUC-Mor-056995 Magnaporthe oryzae 26.92 5.00e-18 84.70
IUUC-Mpo-057482 Magnaporthe poae 31.84 6.00e-21 94.40
IUUC-Mtr-058587 Medicago truncatula 66.85 9.00e-129 452.00
IUUC-Mga-059839 Meleagris gallopavo 39.79 3.00e-36 146.00
IUUC-Mdo-062868 Monodelphis domestica 37.63 3.00e-55 209.00
IUUC-Mmu-064305 Mus musculus 38.64 1.00e-57 216.00
IUUC-Mac-065041 Musa acuminata 63.79 1.00e-124 438.00
IUUC-Mpu-066779 Mustela putorius furo 39.66 2.00e-59 222.00
IUUC-Mlu-067223 Myotis lucifugus 39.32 6.00e-57 215.00
IUUC-Ncr-068919 Neurospora crassa 25.24 9.00e-10 57.40
IUUC-Nle-069852 Nomascus leucogenys 38.31 1.00e-57 216.00
IUUC-Ont-072452 Oreochromis niloticus 36.96 9.00e-56 210.00
IUUC-Oan-073163 Ornithorhynchus anatinus 40.91 6.00e-18 82.40
IUUC-Ocu-074628 Oryctolagus cuniculus 38.98 4.00e-58 218.00
IUUC-Oba-075868 Oryza barthii 63.19 2.00e-108 384.00
IUUC-Obr-076768 Oryza brachyantha 63.92 3.00e-111 394.00
IUUC-Ogl-077424 Oryza glaberrima 63.54 1.00e-110 392.00
IUUC-Ogu-078847 Oryza glumaepatula 62.85 8.00e-108 382.00
IUUC-Oin-079495 Oryza indica 63.54 1.00e-110 392.00
IUUC-Olo-080268 Oryza longistaminata 63.19 3.00e-108 384.00
IUUC-Ome-081709 Oryza meridionalis 62.45 4.00e-98 350.00
IUUC-Oni-082749 Oryza nivara 63.54 1.00e-110 392.00
IUUC-Opu-084023 Oryza punctata 52.43 4.00e-83 300.00
IUUC-Oru-084764 Oryza rufipogon 62.85 8.00e-108 382.00
IUUC-Osa-086009 Oryza sativa 63.54 9.00e-111 392.00
IUUC-Ola-086463 Oryzias latipes 35.88 7.00e-49 187.00
IUUC-Olu-087897 Ostreococcus lucimarinus 42.41 2.00e-56 211.00
IUUC-Oga-089114 Otolemur garnettii 39.66 3.00e-60 224.00
IUUC-Ptr-090556 Pan troglodytes 37.97 5.00e-58 217.00
IUUC-Pan-092828 Papio anubis 38.31 5.00e-58 217.00
IUUC-Psi-093609 Pelodiscus sinensis 35.42 6.00e-44 172.00
IUUC-Pma-094413 Petromyzon marinus 38.31 2.00e-48 186.00
IUUC-Pno-094833 Phaeosphaeria nodorum 30.00 6.00e-17 81.30
IUUC-Ppa-095422 Physcomitrella patens 56.42 2.00e-96 344.00
IUUC-Pfo-096389 Poecilia formosa 36.64 1.00e-53 202.00
IUUC-Pab-098095 Pongo abelii 38.64 9.00e-59 219.00
IUUC-Pop-099612 Populus trichocarpa 68.64 5.00e-127 446.00
IUUC-Pca-100408 Procavia capensis 38.64 7.00e-57 213.00
IUUC-Ppe-101931 Prunus persica 71.91 4.00e-122 430.00
IUUC-Pva-102549 Pteropus vampyrus 38.98 3.00e-59 221.00
IUUC-Pte-104351 Pyrenophora teres 27.60 4.00e-15 76.60
IUUC-Pyt-104789 Pyrenophora triticirepentis 26.49 3.00e-16 79.00
IUUC-Rno-105079 Rattus norvegicus 38.98 3.00e-58 219.00
IUUC-Sha-107299 Sarcophilus harrisii 40.00 2.00e-52 200.00
IUUC-Sja-107829 Schizosaccharomyces japonicus 30.90 2.00e-20 92.40
IUUC-Spo-108122 Schizosaccharomyces pombe 30.74 2.00e-25 109.00
IUUC-Ssl-108586 Sclerotinia sclerotiorum 27.56 6.00e-17 81.30
IUUC-Smo-109613 Selaginella moellendorffii 53.20 6.00e-79 286.00
IUUC-Sit-110621 Setaria italica 56.55 4.00e-113 400.00
IUUC-Sly-110988 Solanum lycopersicum 70.23 2.00e-126 444.00
IUUC-Stu-112713 Solanum tuberosum 70.87 1.00e-127 448.00
IUUC-Sbi-114617 Sorghum bicolor 60.26 4.00e-109 387.00
IUUC-Sre-115136 Sporisorium reilianum 31.49 9.00e-17 80.90
IUUC-Ssc-116268 Sus scrofa 39.32 1.00e-58 220.00
IUUC-Tgu-116720 Taeniopygia guttata 34.98 2.00e-33 136.00
IUUC-Tru-117977 Takifugu rubripes 40.24 5.00e-52 197.00
IUUC-Tsy-119121 Tarsius syrichta 38.79 9.00e-31 127.00
IUUC-Tni-119904 Tetraodon nigroviridis 37.29 2.00e-54 205.00
IUUC-Tca-121718 Theobroma cacao 73.33 6.00e-133 466.00
IUUC-Tae-124364 Triticum aestivum 60.94 1.00e-106 378.00
IUUC-Tme-126922 Tuber melanosporum 25.32 5.00e-20 92.00
IUUC-Tbe-127276 Tupaia belangeri 41.06 4.00e-52 197.00
IUUC-Uma-129505 Ustilago maydis 37.80 2.00e-14 73.20
IUUC-Vpa-130276 Vicugna pacos 38.25 2.00e-40 158.00
IUUC-Vvi-131377 Vitis vinifera 69.44 9.00e-129 454.00
IUUC-Xtr-132529 Xenopus tropicalis 38.30 6.00e-56 211.00
IUUC-Xma-134177 Xiphophorus maculatus 36.64 4.00e-50 191.00
IUUC-Yli-134665 Yarrowia lipolytica 26.12 3.00e-08 52.00
Created Date 25-Jun-2017

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