iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Vda-129715

Ensembl Protein ID

EGY22677

UniProt Accession

G2X2S1; G2X2S1_VERDV

Genbank Protein ID

EGY22677.1

Protein Name

Ribosome biogenesis protein ERB1; Eukaryotic ribosome biogenesis protein 1

Genbank Nucleotide ID

DS572701

Gene Name

ERB1; VDAG_04115

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
VDAG_04115	EGY22677	EGY22677

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.40e-16	59.1	418	455

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvll 36
           gH+++v++la  +d   l+sG+dD+t+++W lrtg+++
   Q: 418  GHEGRVRSLAVsPDgEWLASGGDDCTVRLWHLRTGRQE 455
           8***********999********************986 PP

Organism

Verticillium dahliae

Functional Description
(View)

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Protein Sequence
(Fasta)

MAPQQGLKKR KGPQAEPESD DELNQVALEG VLSEGEDDSD FEGSEGSDTD NDSAEFDGLE 60
GSDVEEDEDE DDGFLSEDIP SDGEDARKDG KIAAGDDEDE GPSYRIVTDA NGGVRYEYDE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCGCCAC AGCAGGGTCT AAAAAAGCGG AAAGGTCCTC AGGCTGAGCC TGAATCCGAC 60
GATGAGCTGA ACCAGGTCGC TTTGGAGGGC GTCCTGTCAG AGGGCGAGGA CGATTCCGAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR028598--BOP1/Erb1
IPR012953--BOP1_N_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08145--BOP1NT
PF00400--WD40

SMART

SM01035--BOP1NT
SM00320--WD40

Gene Ontology

GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0070180--F:large ribosomal subunit rRNA binding
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

vda:VDAG_04115

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001158	Aegilops tauschii	39.28	6.00e-112	396.00
IUUC-Aml-001507	Ailuropoda melanoleuca	40.38	4.00e-134	469.00
IUUC-Atr-003141	Amborella trichopoda	38.06	4.00e-76	276.00
IUUC-Apl-003545	Anas platyrhynchos	40.20	4.00e-120	423.00
IUUC-Aly-005649	Arabidopsis lyrata	41.35	7.00e-136	476.00
IUUC-Ath-007625	Arabidopsis thaliana	41.04	3.00e-129	454.00
IUUC-Ago-007958	Ashbya gossypii	53.40	0.00e+00	734.00
IUUC-Acl-008344	Aspergillus clavatus	65.68	0.00e+00	843.00
IUUC-Afl-008616	Aspergillus flavus	65.21	0.00e+00	876.00
IUUC-Afu-009083	Aspergillus fumigatus	64.44	0.00e+00	835.00
IUUC-Ani-009365	Aspergillus nidulans	64.84	0.00e+00	852.00
IUUC-Ang-009796	Aspergillus niger	64.38	0.00e+00	858.00
IUUC-Aor-010015	Aspergillus oryzae	65.21	0.00e+00	875.00
IUUC-Ate-010537	Aspergillus terreus	63.94	0.00e+00	878.00
IUUC-Ame-011767	Astyanax mexicanus	50.21	2.00e-68	250.00
IUUC-Bgr-012286	Blumeria graminis	71.09	0.00e+00	981.00
IUUC-Bta-013569	Bos taurus	44.01	5.00e-149	519.00
IUUC-Bci-013820	Botrytis cinerea	72.54	0.00e+00	964.00
IUUC-Bdi-014477	Brachypodium distachyon	41.76	2.00e-139	487.00
IUUC-Bol-016099	Brassica oleracea	40.47	4.00e-133	466.00
IUUC-Bra-017174	Brassica rapa	40.62	4.00e-134	471.00
IUUC-Cel-018201	Caenorhabditis elegans	38.07	1.00e-113	402.00
IUUC-Cja-019009	Callithrix jacchus	39.34	4.00e-125	440.00
IUUC-Cfa-020173	Canis familiaris	40.40	3.00e-134	470.00
IUUC-Cpo-021796	Cavia porcellus	43.06	2.00e-146	511.00
IUUC-Cre-022650	Chlamydomonas reinhardtii	41.53	4.00e-127	446.00
IUUC-Csa-023440	Chlorocebus sabaeus	43.64	2.00e-154	537.00
IUUC-Cin-025782	Ciona intestinalis	42.20	1.00e-148	518.00
IUUC-Csv-026352	Ciona savignyi	40.46	7.00e-143	499.00
IUUC-Cgl-026393	Colletotrichum gloeosporioides	71.71	0.00e+00	959.00
IUUC-Cne-027004	Cryptococcus neoformans	47.60	1.00e-178	617.00
IUUC-Cme-027242	Cyanidioschyzon merolae	35.24	1.00e-109	388.00
IUUC-Dre-028658	Danio rerio	43.74	3.00e-158	550.00
IUUC-Dno-028883	Dasypus novemcinctus	43.36	5.00e-150	523.00
IUUC-Dor-031031	Dipodomys ordii	43.19	3.00e-150	523.00
IUUC-Dse-031443	Dothistroma septosporum	58.97	0.00e+00	813.00
IUUC-Dme-031786	Drosophila melanogaster	42.66	2.00e-154	537.00
IUUC-Eca-033677	Equus caballus	44.48	2.00e-149	521.00
IUUC-Eeu-035310	Erinaceus europaeus	39.38	2.00e-110	390.00
IUUC-Fca-035888	Felis catus	42.27	6.00e-149	519.00
IUUC-Fal-037438	Ficedula albicollis	42.45	2.00e-120	424.00
IUUC-Fox-037973	Fusarium oxysporum	75.19	0.00e+00	1133.00
IUUC-Fso-038187	Fusarium solani	75.36	0.00e+00	1123.00
IUUC-Gmo-039114	Gadus morhua	41.67	6.00e-137	479.00
IUUC-Ggr-039746	Gaeumannomyces graminis	69.77	0.00e+00	1054.00
IUUC-Gga-040631	Gallus gallus	42.05	4.00e-83	299.00
IUUC-Gac-042582	Gasterosteus aculeatus	43.28	3.00e-146	510.00
IUUC-Gma-044215	Glycine max	40.95	9.00e-142	495.00
IUUC-Ggo-045587	Gorilla gorilla	43.49	8.00e-154	535.00
IUUC-Hsa-046319	Homo sapiens	43.49	5.00e-154	536.00
IUUC-Hvu-047526	Hordeum vulgare	41.69	6.00e-132	462.00
IUUC-Itr-048683	Ictidomys tridecemlineatus	43.85	3.00e-149	520.00
IUUC-Kpa-049221	Komagataella pastoris	50.15	0.00e+00	684.00
IUUC-Lch-049640	Latimeria chalumnae	42.72	3.00e-163	566.00
IUUC-Lpe-051135	Leersia perrieri	39.84	6.00e-117	412.00
IUUC-Loc-051930	Lepisosteus oculatus	43.69	4.00e-160	556.00
IUUC-Lma-053290	Leptosphaeria maculans	67.54	0.00e+00	922.00
IUUC-Laf-053903	Loxodonta africana	40.59	1.00e-126	444.00
IUUC-Mcc-055471	Macaca mulatta	43.49	1.00e-154	538.00
IUUC-Meu-056190	Macropus eugenii	42.54	1.00e-148	518.00
IUUC-Mor-057135	Magnaporthe oryzae	70.13	0.00e+00	1021.00
IUUC-Mpo-057475	Magnaporthe poae	68.92	0.00e+00	1002.00
IUUC-Mtr-058689	Medicago truncatula	38.61	1.00e-124	438.00
IUUC-Mla-059149	Melampsora laricipopulina	49.02	8.00e-177	611.00
IUUC-Mga-059645	Meleagris gallopavo	34.77	4.00e-45	172.00
IUUC-Mvi-060485	Microbotryum violaceum	45.85	4.00e-155	541.00
IUUC-Mmr-061674	Microcebus murinus	43.22	1.00e-143	501.00
IUUC-Mdo-062973	Monodelphis domestica	42.07	2.00e-153	534.00
IUUC-Mmu-064180	Mus musculus	43.85	1.00e-152	531.00
IUUC-Mac-064535	Musa acuminata	36.85	7.00e-81	293.00
IUUC-Mpu-066406	Mustela putorius furo	43.53	1.00e-152	531.00
IUUC-Mlu-067795	Myotis lucifugus	43.22	1.00e-140	491.00
IUUC-Nfi-068516	Neosartorya fischeri	64.75	0.00e+00	813.00
IUUC-Ncr-068767	Neurospora crassa	67.52	0.00e+00	966.00
IUUC-Opr-071084	Ochotona princeps	42.23	4.00e-61	226.00
IUUC-Ont-071614	Oreochromis niloticus	43.06	2.00e-155	540.00
IUUC-Oba-075980	Oryza barthii	41.79	3.00e-69	254.00
IUUC-Obr-076799	Oryza brachyantha	42.11	5.00e-134	469.00
IUUC-Ogl-077134	Oryza glaberrima	42.43	7.00e-129	452.00
IUUC-Ogu-078655	Oryza glumaepatula	40.85	4.00e-122	430.00
IUUC-Oin-079654	Oryza indica	42.43	2.00e-128	451.00
IUUC-Olo-080706	Oryza longistaminata	42.65	3.00e-70	257.00
IUUC-Ome-081716	Oryza meridionalis	42.65	4.00e-70	257.00
IUUC-Oni-082508	Oryza nivara	40.22	2.00e-117	414.00
IUUC-Opu-083707	Oryza punctata	42.94	4.00e-70	257.00
IUUC-Oru-084453	Oryza rufipogon	42.65	3.00e-70	257.00
IUUC-Osa-085811	Oryza sativa	42.27	1.00e-128	451.00
IUUC-Ola-087361	Oryzias latipes	43.81	7.00e-157	545.00
IUUC-Oga-088015	Otolemur garnettii	42.54	2.00e-150	523.00
IUUC-Oar-090058	Ovis aries	53.25	3.00e-50	191.00
IUUC-Ptr-090631	Pan troglodytes	39.87	2.00e-61	227.00
IUUC-Pan-092306	Papio anubis	43.57	6.00e-153	532.00
IUUC-Pma-094622	Petromyzon marinus	43.22	2.00e-158	550.00
IUUC-Pno-094794	Phaeosphaeria nodorum	61.77	0.00e+00	853.00
IUUC-Ppa-095528	Physcomitrella patens	36.96	6.00e-80	290.00
IUUC-Pfo-096682	Poecilia formosa	42.66	1.00e-158	551.00
IUUC-Pab-097939	Pongo abelii	43.66	2.00e-139	487.00
IUUC-Pop-099043	Populus trichocarpa	41.49	9.00e-124	435.00
IUUC-Pca-100333	Procavia capensis	42.70	2.00e-148	518.00
IUUC-Ppe-102078	Prunus persica	42.14	8.00e-131	459.00
IUUC-Pgr-103525	Puccinia graminis	47.58	3.00e-164	570.00
IUUC-Ptt-103929	Puccinia triticina	47.53	6.00e-159	553.00
IUUC-Pte-104029	Pyrenophora teres	66.42	0.00e+00	944.00
IUUC-Pyt-104446	Pyrenophora triticirepentis	66.27	0.00e+00	947.00
IUUC-Rno-105248	Rattus norvegicus	44.32	4.00e-152	530.00
IUUC-Sce-106381	Saccharomyces cerevisiae	52.49	0.00e+00	719.00
IUUC-Sha-106519	Sarcophilus harrisii	42.97	2.00e-156	544.00
IUUC-Sja-107908	Schizosaccharomyces japonicus	46.56	5.00e-164	569.00
IUUC-Spo-108071	Schizosaccharomyces pombe	46.73	3.00e-161	560.00
IUUC-Smo-109604	Selaginella moellendorffii	41.12	1.00e-122	431.00
IUUC-Sit-110551	Setaria italica	42.61	9.00e-133	465.00
IUUC-Sly-110970	Solanum lycopersicum	43.06	2.00e-71	261.00
IUUC-Stu-112593	Solanum tuberosum	41.35	2.00e-135	474.00
IUUC-Sar-113123	Sorex araneus	49.15	2.00e-61	227.00
IUUC-Sbi-113945	Sorghum bicolor	42.70	3.00e-136	477.00
IUUC-Sre-115188	Sporisorium reilianum	45.58	5.00e-166	576.00
IUUC-Ssc-115352	Sus scrofa	43.22	2.00e-150	523.00
IUUC-Tru-117685	Takifugu rubripes	43.70	1.00e-159	555.00
IUUC-Tni-119982	Tetraodon nigroviridis	43.22	7.00e-153	532.00
IUUC-Tca-121664	Theobroma cacao	41.45	2.00e-135	474.00
IUUC-Tre-122229	Trichoderma reesei	77.07	0.00e+00	956.00
IUUC-Tvi-122576	Trichoderma virens	78.24	0.00e+00	969.00
IUUC-Tae-124110	Triticum aestivum	41.44	7.00e-126	442.00
IUUC-Tur-126781	Triticum urartu	39.28	8.00e-109	385.00
IUUC-Tme-127080	Tuber melanosporum	64.15	0.00e+00	864.00
IUUC-Ttr-128514	Tursiops truncatus	40.18	2.00e-91	327.00
IUUC-Uma-129556	Ustilago maydis	44.65	2.00e-159	555.00
IUUC-Vvi-131211	Vitis vinifera	41.61	4.00e-128	450.00
IUUC-Xma-133883	Xiphophorus maculatus	42.41	3.00e-154	537.00
IUUC-Yli-134438	Yarrowia lipolytica	52.55	0.00e+00	686.00
IUUC-Zma-135341	Zea mays	37.75	2.00e-124	437.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence