iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.90e-15	57.3	2416	2451

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sdtllvsGsdDgtikvWDlrtgvl 35
           H +svt +a    + l+++Gs Dg +k+WD +  +l
   Q: 2416 HLGSVTKIATipRTSLFLTGSKDGEVKLWDAKAAKL 2451
           999*****96664489**************766655 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MRYRIQLKPS GLERGSGDPR TDRIDHLPLR QLRSEIVPPA PTRSQSSIDW LPDFANYSWL 60
AYGASTLVVI SHLPSPLRGE DSTNGPFFRQ ILEVSGEPVT AVCWSPVTPS VGELAVGSGN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAGATATA GGATCCAGCT CAAACCTTCT GGCTTGGAAC GAGGGTCCGG TGATCCTCGT 60
ACTGGTAAGT TGTGTAGCAC AATCGGAAAA AAATAGTTGT GGTCTAAGAT TTGAGTTTTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR022033--Rav1p_C
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12234--Rav1p_C
PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0043291--C:RAVE complex
GO:0007035--P:vacuolar acidification
GO:0070072--P:vacuolar proton-transporting V-type ATPase complex assembly

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000362	Aegilops tauschii	59.01	2.00e-52	196.00
IUUC-Aml-001368	Ailuropoda melanoleuca	32.27	1.00e-34	142.00
IUUC-Atr-002754	Amborella trichopoda	55.56	0.00e+00	627.00
IUUC-Apl-003377	Anas platyrhynchos	32.29	3.00e-34	141.00
IUUC-Aca-004649	Anolis carolinensis	33.45	4.00e-36	147.00
IUUC-Aly-006404	Arabidopsis lyrata	89.46	0.00e+00	4369.00
IUUC-Afu-009077	Aspergillus fumigatus	34.50	8.00e-37	149.00
IUUC-Ani-009437	Aspergillus nidulans	26.20	3.00e-38	154.00
IUUC-Ang-009742	Aspergillus niger	28.02	4.00e-41	163.00
IUUC-Ame-010919	Astyanax mexicanus	29.40	2.00e-37	152.00
IUUC-Bta-013088	Bos taurus	33.07	7.00e-35	144.00
IUUC-Bdi-014471	Brachypodium distachyon	43.62	1.00e-169	589.00
IUUC-Bol-016375	Brassica oleracea	81.00	0.00e+00	3932.00
IUUC-Bra-016630	Brassica rapa	80.68	0.00e+00	3974.00
IUUC-Cel-018537	Caenorhabditis elegans	29.52	2.00e-24	109.00
IUUC-Cja-019137	Callithrix jacchus	33.05	2.00e-33	139.00
IUUC-Cfa-021215	Canis familiaris	31.87	4.00e-34	141.00
IUUC-Cpo-022333	Cavia porcellus	32.67	8.00e-35	143.00
IUUC-Csa-023972	Chlorocebus sabaeus	28.12	2.00e-34	142.00
IUUC-Cho-024762	Choloepus hoffmanni	28.32	1.00e-33	139.00
IUUC-Csv-026055	Ciona savignyi	33.99	5.00e-37	150.00
IUUC-Dre-028673	Danio rerio	28.28	2.00e-34	142.00
IUUC-Dno-029855	Dasypus novemcinctus	29.11	2.00e-26	115.00
IUUC-Dor-030381	Dipodomys ordii	32.77	2.00e-34	142.00
IUUC-Dme-031825	Drosophila melanogaster	36.22	2.00e-39	159.00
IUUC-Ete-033176	Echinops telfairi	33.19	3.00e-33	138.00
IUUC-Eca-033386	Equus caballus	32.64	2.00e-33	139.00
IUUC-Eeu-035011	Erinaceus europaeus	29.47	7.00e-32	134.00
IUUC-Fca-035735	Felis catus	29.97	4.00e-35	144.00
IUUC-Fal-037367	Ficedula albicollis	30.18	2.00e-35	145.00
IUUC-Gmo-038687	Gadus morhua	31.79	5.00e-35	144.00
IUUC-Gga-040693	Gallus gallus	30.03	1.00e-35	145.00
IUUC-Gac-041986	Gasterosteus aculeatus	30.23	2.00e-37	152.00
IUUC-Gma-044099	Glycine max	46.89	0.00e+00	2068.00
IUUC-Ggo-044811	Gorilla gorilla	31.69	5.00e-34	140.00
IUUC-Hsa-045950	Homo sapiens	31.69	6.00e-34	140.00
IUUC-Hvu-047213	Hordeum vulgare	65.12	4.00e-117	413.00
IUUC-Itr-047982	Ictidomys tridecemlineatus	24.67	1.00e-33	140.00
IUUC-Lch-050020	Latimeria chalumnae	29.91	2.00e-35	145.00
IUUC-Lpe-051382	Leersia perrieri	38.12	0.00e+00	1243.00
IUUC-Loc-052909	Lepisosteus oculatus	28.64	5.00e-39	157.00
IUUC-Laf-054195	Loxodonta africana	33.19	2.00e-34	142.00
IUUC-Mcc-055646	Macaca mulatta	31.34	9.00e-34	140.00
IUUC-Meu-056627	Macropus eugenii	29.46	1.00e-22	102.00
IUUC-Mtr-058725	Medicago truncatula	46.73	0.00e+00	2076.00
IUUC-Mga-059386	Meleagris gallopavo	28.32	2.00e-34	142.00
IUUC-Mmr-060784	Microcebus murinus	28.53	2.00e-35	145.00
IUUC-Mdo-062837	Monodelphis domestica	33.19	2.00e-28	122.00
IUUC-Mmu-063808	Mus musculus	31.13	5.00e-37	150.00
IUUC-Mac-065224	Musa acuminata	41.31	0.00e+00	1696.00
IUUC-Mpu-066054	Mustela putorius furo	28.12	5.00e-34	141.00
IUUC-Mlu-067458	Myotis lucifugus	33.33	2.00e-34	142.00
IUUC-Nfi-068420	Neosartorya fischeri	30.68	4.00e-36	146.00
IUUC-Nle-070123	Nomascus leucogenys	31.69	5.00e-34	140.00
IUUC-Opr-070543	Ochotona princeps	25.74	2.00e-18	89.00
IUUC-Ont-071658	Oreochromis niloticus	30.15	4.00e-38	154.00
IUUC-Oan-072796	Ornithorhynchus anatinus	28.85	3.00e-15	73.90
IUUC-Ocu-074711	Oryctolagus cuniculus	28.64	6.00e-34	140.00
IUUC-Oba-075826	Oryza barthii	37.15	0.00e+00	1461.00
IUUC-Obr-076145	Oryza brachyantha	36.90	0.00e+00	1441.00
IUUC-Ogu-078307	Oryza glumaepatula	36.93	0.00e+00	1478.00
IUUC-Oin-080118	Oryza indica	35.87	0.00e+00	862.00
IUUC-Olo-080848	Oryza longistaminata	46.94	9.00e-165	574.00
IUUC-Oni-082792	Oryza nivara	38.39	0.00e+00	1178.00
IUUC-Opu-084153	Oryza punctata	38.33	0.00e+00	1196.00
IUUC-Oru-084415	Oryza rufipogon	37.63	0.00e+00	1141.00
IUUC-Osa-085332	Oryza sativa	52.91	1.00e-174	605.00
IUUC-Ola-087560	Oryzias latipes	34.48	2.00e-32	135.00
IUUC-Oga-088816	Otolemur garnettii	30.11	4.00e-35	144.00
IUUC-Oar-089618	Ovis aries	33.07	9.00e-35	143.00
IUUC-Ptr-090937	Pan troglodytes	31.69	6.00e-34	140.00
IUUC-Pan-092151	Papio anubis	32.77	2.00e-33	139.00
IUUC-Psi-093590	Pelodiscus sinensis	31.23	3.00e-33	138.00
IUUC-Ppa-095505	Physcomitrella patens	45.38	1.00e-114	408.00
IUUC-Pfo-097445	Poecilia formosa	29.06	1.00e-37	153.00
IUUC-Pab-098237	Pongo abelii	32.67	7.00e-34	140.00
IUUC-Pop-098812	Populus trichocarpa	48.67	0.00e+00	2152.00
IUUC-Pca-101008	Procavia capensis	31.69	5.00e-34	140.00
IUUC-Ppe-101610	Prunus persica	49.63	0.00e+00	2286.00
IUUC-Pva-102348	Pteropus vampyrus	33.19	1.00e-33	139.00
IUUC-Rno-105076	Rattus norvegicus	31.13	2.00e-36	149.00
IUUC-Sha-106860	Sarcophilus harrisii	32.95	1.00e-33	139.00
IUUC-Sja-107657	Schizosaccharomyces japonicus	32.62	4.00e-28	120.00
IUUC-Smo-109444	Selaginella moellendorffii	51.30	3.00e-120	424.00
IUUC-Sit-109981	Setaria italica	41.21	0.00e+00	789.00
IUUC-Sly-110968	Solanum lycopersicum	43.99	0.00e+00	1911.00
IUUC-Stu-111939	Solanum tuberosum	71.59	1.00e-76	277.00
IUUC-Sar-113751	Sorex araneus	28.57	2.00e-20	96.30
IUUC-Sbi-113768	Sorghum bicolor	65.54	1.00e-65	241.00
IUUC-Ssc-116371	Sus scrofa	32.67	1.00e-34	143.00
IUUC-Tgu-117108	Taeniopygia guttata	32.41	5.00e-35	144.00
IUUC-Tru-117628	Takifugu rubripes	29.69	6.00e-38	154.00
IUUC-Tsy-119228	Tarsius syrichta	31.37	2.00e-33	139.00
IUUC-Tni-120709	Tetraodon nigroviridis	28.34	6.00e-37	150.00
IUUC-Tca-121789	Theobroma cacao	49.77	0.00e+00	2058.00
IUUC-Tae-125726	Triticum aestivum	38.18	0.00e+00	1459.00
IUUC-Tur-126437	Triticum urartu	40.56	2.00e-60	227.00
IUUC-Tbe-127760	Tupaia belangeri	28.31	3.00e-34	142.00
IUUC-Ttr-128991	Tursiops truncatus	31.56	5.00e-35	144.00
IUUC-Vpa-130309	Vicugna pacos	33.61	2.00e-34	142.00
IUUC-Vvi-131584	Vitis vinifera	44.65	0.00e+00	821.00
IUUC-Xtr-132638	Xenopus tropicalis	30.64	2.00e-34	142.00
IUUC-Xma-134109	Xiphophorus maculatus	28.25	2.00e-37	152.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence