iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-114195

UUCD1 version

UUC-SoB-00640

Ensembl Protein ID

Sb03g005130.1

UniProt Accession

A0A1B6Q1M2; A0A1B6Q1M2_SORBI

Genbank Protein ID

KXG31808.1; KXG31809.1

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000762; CM000762

Gene Name

SORBI_003G059800

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb03g005130	Sb03g005130.1	Sb03g005130.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.30e-27	95.5	323	357
UBD/Beta-Prp	1.20e-44	153.5	229	452

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf...sd..tllvsGsdDgtikvWDl 30
           gHt+ vt++af   ++    l+s+sdDgt+++WD 
   Q: 323  GHTGAVTAIAFsprPGaaFQLLSSSDDGTCRIWDA 357
           8**********988555555**************5 PP

UBD/Beta-Prp

   S: 40   ttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsg 135
           ++++ +++l gh+++v++ +f+++g + +tgs+Dr++k+w  +t  c+ + +ghe ++++l++s ++ +++s s+d +irvw ++ g  ++ +l+g
   Q: 229  EKMQIIKRLRGHQNAVYCATFDRTGRYVITGSDDRLVKIWATETAFCLASCRGHEGDITDLAVSSNNAVVASSSNDFIIRVWRMPDGMPVS-VLKG 323
           67788999*********************************************************9************************9.**** PP
   S: 136  hdgvvncvvvhpd..g.nllvsGslDrtvrlWdl.......................ktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvk 205
           h+g+v+ ++++p   + + l s+s+D+t+r+Wd                           +   + +   ++++ + +f+ ng+ +v+gs d+  +
   Q: 324  HTGAVTAIAFSPRpgAaFQLLSSSDDGTCRIWDArysqqpprvytpkppdvapgksgDASSSAAQVQP-TNHQILCCAFNANGTVFVTGSSDTFAR 418
           ********9987533348899************99999999999999999999966655555666676.899999999****************** PP
   S: 206  lwdlq.tgec........vrtlnghtdnvksvrf 230
           +w+   +++         ++ l gh++ v+ v+f
   Q: 419  VWNACkSSSDeheqpnheMDLLCGHENDVNYVQF 452
           **96643333223333335555566677777666 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MSFRKHQPSS NGASISIVPL DFPSQELEKV NPVNSVMSTD FASMDGVDID MREVYFLIMH 60
FLSHGPFKRT FGELCNELLE HQLLPRRYHA WYSRGGFHSG EENDDGISLP LGYVKLAERY 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCTTTCA GAAAGCACCA ACCTTCCAGT AATGGAGCTT CCATTAGTAT AGTTCCTCTG 60
GATTTTCCAA GTCAGGAACT GGAGAAGGTT AATCCTGTGA ATTCAGTGAT GTCAACTGAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001113	Aegilops tauschii	74.53	0.00e+00	909.00
IUUC-Aml-001881	Ailuropoda melanoleuca	28.97	6.00e-58	219.00
IUUC-Atr-002600	Amborella trichopoda	73.08	0.00e+00	857.00
IUUC-Apl-003700	Anas platyrhynchos	33.33	2.00e-35	144.00
IUUC-Aca-004474	Anolis carolinensis	30.37	6.00e-64	239.00
IUUC-Aly-006517	Arabidopsis lyrata	70.77	0.00e+00	813.00
IUUC-Ath-006577	Arabidopsis thaliana	69.90	0.00e+00	809.00
IUUC-Ame-010718	Astyanax mexicanus	29.65	5.00e-59	223.00
IUUC-Bta-013217	Bos taurus	29.24	1.00e-57	219.00
IUUC-Bdi-014797	Brachypodium distachyon	69.47	0.00e+00	820.00
IUUC-Bol-016525	Brassica oleracea	70.53	0.00e+00	788.00
IUUC-Bra-017961	Brassica rapa	66.62	0.00e+00	777.00
IUUC-Cja-018868	Callithrix jacchus	29.85	6.00e-64	239.00
IUUC-Cfa-021037	Canis familiaris	29.69	3.00e-59	224.00
IUUC-Cpo-021934	Cavia porcellus	28.79	6.00e-58	219.00
IUUC-Cre-023003	Chlamydomonas reinhardtii	34.75	1.00e-34	140.00
IUUC-Csa-023618	Chlorocebus sabaeus	30.25	7.00e-64	239.00
IUUC-Cho-024690	Choloepus hoffmanni	26.50	2.00e-19	92.00
IUUC-Csv-025813	Ciona savignyi	25.00	5.00e-43	168.00
IUUC-Dre-028029	Danio rerio	29.15	2.00e-61	230.00
IUUC-Dno-030048	Dasypus novemcinctus	29.74	2.00e-58	221.00
IUUC-Dor-031052	Dipodomys ordii	26.70	3.00e-35	144.00
IUUC-Dme-031752	Drosophila melanogaster	28.06	5.00e-59	223.00
IUUC-Ete-032717	Echinops telfairi	33.55	2.00e-33	138.00
IUUC-Eca-034274	Equus caballus	29.37	4.00e-55	209.00
IUUC-Eeu-034871	Erinaceus europaeus	27.41	1.00e-35	145.00
IUUC-Fca-036099	Felis catus	28.97	4.00e-58	219.00
IUUC-Fal-037307	Ficedula albicollis	28.25	9.00e-60	226.00
IUUC-Gmo-039116	Gadus morhua	27.39	4.00e-18	87.40
IUUC-Gga-040865	Gallus gallus	28.95	5.00e-60	226.00
IUUC-Gac-042435	Gasterosteus aculeatus	27.64	3.00e-48	187.00
IUUC-Gma-044324	Glycine max	69.79	0.00e+00	811.00
IUUC-Ggo-045500	Gorilla gorilla	28.94	1.00e-58	222.00
IUUC-Hsa-046757	Homo sapiens	30.25	5.00e-64	239.00
IUUC-Hvu-047706	Hordeum vulgare	92.11	6.00e-177	612.00
IUUC-Lch-050646	Latimeria chalumnae	29.00	1.00e-62	235.00
IUUC-Lpe-051619	Leersia perrieri	90.26	0.00e+00	1062.00
IUUC-Loc-052672	Lepisosteus oculatus	29.78	2.00e-62	234.00
IUUC-Laf-053848	Loxodonta africana	28.64	1.00e-57	219.00
IUUC-Mcc-055061	Macaca mulatta	30.08	2.00e-62	234.00
IUUC-Meu-056321	Macropus eugenii	28.44	2.00e-48	187.00
IUUC-Mtr-057637	Medicago truncatula	69.86	0.00e+00	809.00
IUUC-Mga-060165	Meleagris gallopavo	28.51	9.00e-60	225.00
IUUC-Mmr-061227	Microcebus murinus	29.09	2.00e-59	224.00
IUUC-Mdo-061903	Monodelphis domestica	30.20	3.00e-64	240.00
IUUC-Mmu-063772	Mus musculus	30.41	5.00e-64	239.00
IUUC-Mac-065343	Musa acuminata	76.73	0.00e+00	931.00
IUUC-Mpu-066628	Mustela putorius furo	28.94	2.00e-60	228.00
IUUC-Mlu-068082	Myotis lucifugus	28.81	1.00e-57	218.00
IUUC-Nle-069402	Nomascus leucogenys	28.94	1.00e-58	221.00
IUUC-Opr-070971	Ochotona princeps	25.46	5.00e-32	133.00
IUUC-Ont-072221	Oreochromis niloticus	31.09	9.00e-62	232.00
IUUC-Oan-072954	Ornithorhynchus anatinus	28.11	5.00e-64	240.00
IUUC-Ocu-074033	Oryctolagus cuniculus	29.74	2.00e-55	211.00
IUUC-Oba-075709	Oryza barthii	89.44	0.00e+00	1072.00
IUUC-Obr-076619	Oryza brachyantha	90.06	0.00e+00	1103.00
IUUC-Ogl-077493	Oryza glaberrima	87.50	0.00e+00	664.00
IUUC-Ogu-078641	Oryza glumaepatula	81.84	8.00e-169	587.00
IUUC-Oin-079669	Oryza indica	88.10	1.00e-173	602.00
IUUC-Olo-080755	Oryza longistaminata	87.85	6.00e-175	608.00
IUUC-Oni-082991	Oryza nivara	81.84	4.00e-169	588.00
IUUC-Opu-083233	Oryza punctata	89.29	0.00e+00	1103.00
IUUC-Oru-085195	Oryza rufipogon	89.44	0.00e+00	1072.00
IUUC-Ola-086648	Oryzias latipes	30.27	4.00e-63	236.00
IUUC-Olu-087745	Ostreococcus lucimarinus	31.42	8.00e-57	215.00
IUUC-Oga-089053	Otolemur garnettii	28.97	1.00e-57	218.00
IUUC-Oar-090042	Ovis aries	28.97	4.00e-58	219.00
IUUC-Ptr-091213	Pan troglodytes	28.94	2.00e-58	221.00
IUUC-Pan-092734	Papio anubis	30.25	6.00e-64	239.00
IUUC-Psi-093408	Pelodiscus sinensis	27.38	2.00e-53	204.00
IUUC-Pma-094427	Petromyzon marinus	32.18	1.00e-34	139.00
IUUC-Ppa-095793	Physcomitrella patens	60.81	0.00e+00	733.00
IUUC-Pfo-096191	Poecilia formosa	30.54	7.00e-62	232.00
IUUC-Pab-098402	Pongo abelii	30.25	7.00e-64	239.00
IUUC-Pop-099803	Populus trichocarpa	68.73	0.00e+00	838.00
IUUC-Pca-101128	Procavia capensis	29.47	7.00e-52	199.00
IUUC-Ppe-101283	Prunus persica	71.45	0.00e+00	862.00
IUUC-Pva-102512	Pteropus vampyrus	28.97	9.00e-58	218.00
IUUC-Rno-105687	Rattus norvegicus	29.09	3.00e-57	217.00
IUUC-Sha-106680	Sarcophilus harrisii	28.89	1.00e-57	219.00
IUUC-Sit-110017	Setaria italica	72.62	0.00e+00	845.00
IUUC-Sly-111859	Solanum lycopersicum	73.70	0.00e+00	859.00
IUUC-Sar-113004	Sorex araneus	29.11	1.00e-57	218.00
IUUC-Ssc-115461	Sus scrofa	29.75	9.00e-61	228.00
IUUC-Tgu-116513	Taeniopygia guttata	28.24	4.00e-60	226.00
IUUC-Tru-117625	Takifugu rubripes	30.37	1.00e-63	238.00
IUUC-Tsy-119003	Tarsius syrichta	31.22	9.00e-50	192.00
IUUC-Tni-120716	Tetraodon nigroviridis	30.37	2.00e-62	234.00
IUUC-Tca-121615	Theobroma cacao	71.61	0.00e+00	820.00
IUUC-Tae-125478	Triticum aestivum	87.89	0.00e+00	1122.00
IUUC-Tur-126809	Triticum urartu	87.89	0.00e+00	1123.00
IUUC-Tbe-127479	Tupaia belangeri	34.55	4.00e-31	130.00
IUUC-Ttr-128561	Tursiops truncatus	29.09	3.00e-54	207.00
IUUC-Vpa-130160	Vicugna pacos	29.72	3.00e-57	217.00
IUUC-Vvi-131362	Vitis vinifera	74.07	0.00e+00	894.00
IUUC-Xtr-132717	Xenopus tropicalis	30.00	3.00e-64	240.00
IUUC-Xma-134120	Xiphophorus maculatus	30.37	6.00e-64	238.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence