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Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Ath-006969
Ensembl Protein ID AT3G05090.1
UniProt Accession Q93ZS6; Q93ZS6_ARATH
Genbank Protein ID AAL07141.1; AAM83246.1; AAN13212.1; AAN18197.1; AEE74183.1; AEE74184.1; ANM63427.1; BAE98936.1
Protein Name AT3g05090/T12H1_5; At3g05090/T12H1_5; Putative uncharacterized protein At3g05090; Transducin/WD40 repeat-like superfamily protein
Genbank Nucleotide ID AY056292; AY127022; AY142674; BT000631; CP002686; CP002686; CP002686; AK226843
Gene Name LRS1; LATERAL ROOT STIMULATOR 1; At3g05090; T12H1.5; T12H1_5
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT3G05090 AT3G05090.1 AT3G05090.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 9.40e-34 114.9 211 246
UBD/Beta-Prp 3.30e-46 158.7 46 332
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgv 34
           gH++sv++la  ++ t+lvsG+  ++++vWD+rtg 
   Q: 211  GHKESVYALAMnDTgTMLVSGGTEKVLRVWDPRTGS 246
           8**********7447******************996 PP
   

   UBD/Beta-Prp
   S: 16   vkfspdksllatgsrdgtikvwdvttgkl..lrslsgheaevtavkfspdgkilvtgseDrtikvw.dlstgkcvhtlkghedsvlslsfsp.sgdkl 109
             +s+d+s+l+tgsrdgt+k w +++  +   +++++h + v++  +  ++ +lv++s+D t+k w  ls+g c++tl++h+d+v++l++ + +++++
   Q: 46   SSVSNDQSYLFTGSRDGTLKRWAFDEDATfcSATFESHVDWVNDAALAGES-TLVSCSSDTTVKTWdGLSDGVCTRTLRQHSDYVTCLAVAAkNNNVV 142
           4459********************9988777999****************8.9*************669***********************777*** PP
   S: 110  vsGshdrtirvwdletgqclee...........................................tlsghdgvvncvvvhpdgnllvsGslDrtvrlW 164
           +sG+    + +wd+e      +                                           + +gh+++v  ++++++g +lvsG++ +++r+W
   Q: 143  ASGGLGGEVFIWDIEAALSPVTkpndanedsssngangpvtslrtvgssnnisvqsspshgytptIAKGHKESVYALAMNDTGTMLVSGGTEKVLRVW 240
           ***************98777777855555555555555555555555555555555555555555555555555555555555555555555555555 PP
   S: 165  dlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdll 257
           d +tg+   +l+g htd v+ l +ds+g++++sgs d+ ++lwdl +++c++t+  htd v+ ++  p   +++sg+ D+ +++ dl +++ +
   Q: 241  DPRTGSKSMKLRG-HTDNVRVLLLDSTGRFCLSGSSDSMIRLWDLGQQRCLHTYAVHTDSVWALACNPSFSHVYSGGRDQCLYLTDLATRESV 332
           5555555555555.5555555555555555555555555555555555555555555555555555555555555555555555555555555 PP
   
Organism Arabidopsis thaliana
Protein Sequence
(Fasta)
MHRVGSAGSN GGSVRTRKEK KLTYVLNDAN DTKHCAGINC LDVLKSSVSN DQSYLFTGSR 60
DGTLKRWAFD EDATFCSATF ESHVDWVNDA ALAGESTLVS CSSDTTVKTW DGLSDGVCTR 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Ath-006969|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
GTCCTCTATG GGCTGATTTT ACCAAGTCTC GCTCGAGAGC CTTTGAGAGA AGAGTTTGTG 60
TTTCTTAAGG AAAAAAAAAC ACTTTTTTTT TTTTGTTTCT TCTTCTTCTT CGTCTTCTTC 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Ath-006969|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat
Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR021772--DUF3337
IPR020472--G-protein_beta_WD-40_rep
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF11816--DUF3337
PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00320--WD40
Gene Ontology

GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:0010311--P:lateral root formation
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-001160 Aegilops tauschii 72.37 0.00e+00 764.00
IUUC-Aml-001533 Ailuropoda melanoleuca 34.16 9.00e-101 360.00
IUUC-Atr-003009 Amborella trichopoda 70.50 0.00e+00 1089.00
IUUC-Apl-003709 Anas platyrhynchos 41.71 3.00e-67 248.00
IUUC-Aca-004875 Anolis carolinensis 34.20 2.00e-101 362.00
IUUC-Aly-005464 Arabidopsis lyrata 95.95 0.00e+00 1397.00
IUUC-Acl-008203 Aspergillus clavatus 31.22 4.00e-58 219.00
IUUC-Afl-008571 Aspergillus flavus 30.29 1.00e-57 217.00
IUUC-Afu-009072 Aspergillus fumigatus 30.70 1.00e-54 207.00
IUUC-Ani-009413 Aspergillus nidulans 30.58 5.00e-58 219.00
IUUC-Ang-009571 Aspergillus niger 30.47 2.00e-58 220.00
IUUC-Aor-010064 Aspergillus oryzae 30.24 9.00e-58 218.00
IUUC-Ate-010463 Aspergillus terreus 31.29 4.00e-59 222.00
IUUC-Ame-010772 Astyanax mexicanus 33.58 6.00e-87 314.00
IUUC-Bgr-012288 Blumeria graminis 29.88 1.00e-61 231.00
IUUC-Bta-013379 Bos taurus 34.07 2.00e-100 359.00
IUUC-Bci-013859 Botrytis cinerea 30.13 8.00e-63 234.00
IUUC-Bdi-014645 Brachypodium distachyon 67.85 0.00e+00 1027.00
IUUC-Bol-015551 Brassica oleracea 90.37 0.00e+00 1313.00
IUUC-Bra-017253 Brassica rapa 90.77 0.00e+00 1295.00
IUUC-Cel-018656 Caenorhabditis elegans 29.28 1.00e-80 293.00
IUUC-Cja-018804 Callithrix jacchus 33.81 2.00e-100 358.00
IUUC-Cfa-020076 Canis familiaris 34.07 1.00e-100 359.00
IUUC-Cpo-021721 Cavia porcellus 33.96 1.00e-98 353.00
IUUC-Cre-022779 Chlamydomonas reinhardtii 35.93 7.00e-48 185.00
IUUC-Csa-023188 Chlorocebus sabaeus 34.07 1.00e-100 359.00
IUUC-Cho-024932 Choloepus hoffmanni 33.42 4.00e-96 345.00
IUUC-Cin-025591 Ciona intestinalis 31.75 5.00e-89 321.00
IUUC-Cgl-026540 Colletotrichum gloeosporioides 30.22 4.00e-17 83.20
IUUC-Cne-026819 Cryptococcus neoformans 30.03 1.00e-29 125.00
IUUC-Cme-027188 Cyanidioschyzon merolae 32.27 2.00e-71 263.00
IUUC-Dre-028370 Danio rerio 33.55 2.00e-101 362.00
IUUC-Dno-029960 Dasypus novemcinctus 33.42 2.00e-98 352.00
IUUC-Dor-030933 Dipodomys ordii 39.56 1.00e-70 259.00
IUUC-Dse-031532 Dothistroma septosporum 33.08 1.00e-41 164.00
IUUC-Dme-032168 Drosophila melanogaster 28.40 3.00e-73 268.00
IUUC-Ete-033107 Echinops telfairi 32.48 3.00e-90 325.00
IUUC-Eca-034028 Equus caballus 34.20 1.00e-100 360.00
IUUC-Eeu-034894 Erinaceus europaeus 37.70 1.00e-80 293.00
IUUC-Fca-035619 Felis catus 38.39 3.00e-87 315.00
IUUC-Fal-036869 Ficedula albicollis 34.63 4.00e-100 358.00
IUUC-Fox-037907 Fusarium oxysporum 28.76 8.00e-54 204.00
IUUC-Fso-038101 Fusarium solani 29.30 2.00e-54 207.00
IUUC-Gmo-038627 Gadus morhua 34.08 2.00e-101 362.00
IUUC-Ggr-039995 Gaeumannomyces graminis 28.50 4.00e-37 149.00
IUUC-Gga-040555 Gallus gallus 34.81 3.00e-102 365.00
IUUC-Gac-042497 Gasterosteus aculeatus 33.64 3.00e-101 362.00
IUUC-Gma-043327 Glycine max 72.12 0.00e+00 1124.00
IUUC-Ggo-045561 Gorilla gorilla 34.07 1.00e-100 359.00
IUUC-Hsa-045710 Homo sapiens 34.07 1.00e-100 359.00
IUUC-Hvu-047730 Hordeum vulgare 69.32 0.00e+00 738.00
IUUC-Itr-049030 Ictidomys tridecemlineatus 34.04 6.00e-65 240.00
IUUC-Kpa-049237 Komagataella pastoris 32.24 2.00e-27 117.00
IUUC-Lch-049507 Latimeria chalumnae 34.08 1.00e-98 353.00
IUUC-Lpe-051608 Leersia perrieri 66.10 0.00e+00 979.00
IUUC-Loc-052373 Lepisosteus oculatus 33.07 9.00e-92 330.00
IUUC-Lma-053025 Leptosphaeria maculans 30.13 2.00e-58 220.00
IUUC-Laf-053706 Loxodonta africana 34.40 2.00e-99 355.00
IUUC-Mcc-055046 Macaca mulatta 34.07 1.00e-100 359.00
IUUC-Meu-056840 Macropus eugenii 35.11 1.00e-27 117.00
IUUC-Mor-057284 Magnaporthe oryzae 29.36 2.00e-57 217.00
IUUC-Mpo-057418 Magnaporthe poae 28.83 6.00e-36 145.00
IUUC-Mtr-058384 Medicago truncatula 70.66 0.00e+00 1029.00
IUUC-Mla-059101 Melampsora laricipopulina 34.27 1.00e-39 158.00
IUUC-Mga-059297 Meleagris gallopavo 34.81 3.00e-102 365.00
IUUC-Mvi-060419 Microbotryum violaceum 32.62 3.00e-34 140.00
IUUC-Mmr-061196 Microcebus murinus 35.80 3.00e-81 295.00
IUUC-Mdo-062762 Monodelphis domestica 33.98 2.00e-99 355.00
IUUC-Mmu-063915 Mus musculus 34.20 3.00e-101 362.00
IUUC-Mac-065434 Musa acuminata 67.57 0.00e+00 1051.00
IUUC-Mpu-065999 Mustela putorius furo 38.52 2.00e-83 301.00
IUUC-Mlu-068226 Myotis lucifugus 34.07 3.00e-100 358.00
IUUC-Nfi-068416 Neosartorya fischeri 31.71 2.00e-58 220.00
IUUC-Ncr-068825 Neurospora crassa 29.18 2.00e-59 223.00
IUUC-Nle-069416 Nomascus leucogenys 34.07 1.00e-100 359.00
IUUC-Opr-070515 Ochotona princeps 32.64 4.00e-90 325.00
IUUC-Ont-072052 Oreochromis niloticus 32.77 1.00e-97 350.00
IUUC-Oan-073636 Ornithorhynchus anatinus 33.87 1.00e-99 356.00
IUUC-Ocu-074799 Oryctolagus cuniculus 34.07 1.00e-100 360.00
IUUC-Oba-075146 Oryza barthii 66.14 0.00e+00 981.00
IUUC-Obr-076699 Oryza brachyantha 66.80 0.00e+00 996.00
IUUC-Ogl-077883 Oryza glaberrima 66.13 0.00e+00 631.00
IUUC-Ogu-078114 Oryza glumaepatula 61.59 0.00e+00 874.00
IUUC-Oin-079575 Oryza indica 67.06 0.00e+00 1004.00
IUUC-Olo-080531 Oryza longistaminata 63.05 0.00e+00 935.00
IUUC-Ome-081368 Oryza meridionalis 62.32 0.00e+00 901.00
IUUC-Oni-082457 Oryza nivara 66.14 0.00e+00 982.00
IUUC-Opu-084050 Oryza punctata 66.14 0.00e+00 968.00
IUUC-Oru-084330 Oryza rufipogon 66.14 0.00e+00 981.00
IUUC-Osa-085408 Oryza sativa 67.06 0.00e+00 1004.00
IUUC-Ola-087546 Oryzias latipes 32.98 1.00e-100 360.00
IUUC-Olu-087710 Ostreococcus lucimarinus 32.84 4.00e-99 354.00
IUUC-Oga-087998 Otolemur garnettii 34.40 7.00e-100 357.00
IUUC-Oar-090303 Ovis aries 34.07 2.00e-100 359.00
IUUC-Ptr-090588 Pan troglodytes 34.07 1.00e-100 359.00
IUUC-Pan-092722 Papio anubis 34.07 1.00e-100 359.00
IUUC-Psi-093911 Pelodiscus sinensis 34.55 1.00e-100 360.00
IUUC-Pma-094580 Petromyzon marinus 34.13 2.00e-101 362.00
IUUC-Pno-095085 Phaeosphaeria nodorum 34.51 7.00e-42 165.00
IUUC-Ppa-095594 Physcomitrella patens 59.87 0.00e+00 868.00
IUUC-Pfo-096994 Poecilia formosa 34.07 6.00e-100 357.00
IUUC-Pab-097586 Pongo abelii 33.90 8.00e-101 360.00
IUUC-Pop-099389 Populus trichocarpa 73.85 0.00e+00 1142.00
IUUC-Pca-100458 Procavia capensis 37.50 2.00e-35 142.00
IUUC-Ppe-102060 Prunus persica 75.00 0.00e+00 1125.00
IUUC-Pva-102698 Pteropus vampyrus 38.82 1.00e-87 316.00
IUUC-Pgr-103649 Puccinia graminis 33.33 4.00e-35 143.00
IUUC-Ptt-103910 Puccinia triticina 32.08 4.00e-39 156.00
IUUC-Pte-104181 Pyrenophora teres 30.56 1.00e-58 221.00
IUUC-Pyt-104439 Pyrenophora triticirepentis 30.05 8.00e-58 218.00
IUUC-Rno-104978 Rattus norvegicus 34.45 3.00e-100 358.00
IUUC-Sha-107079 Sarcophilus harrisii 35.36 3.00e-92 332.00
IUUC-Sja-107716 Schizosaccharomyces japonicus 28.42 5.00e-59 222.00
IUUC-Spo-108325 Schizosaccharomyces pombe 28.62 1.00e-49 191.00
IUUC-Ssl-108542 Sclerotinia sclerotiorum 29.68 1.00e-60 228.00
IUUC-Smo-109427 Selaginella moellendorffii 58.43 0.00e+00 866.00
IUUC-Sit-110755 Setaria italica 67.50 0.00e+00 991.00
IUUC-Sly-111099 Solanum lycopersicum 72.21 0.00e+00 1031.00
IUUC-Sar-113408 Sorex araneus 38.19 1.00e-75 276.00
IUUC-Sbi-113789 Sorghum bicolor 66.36 0.00e+00 988.00
IUUC-Sre-114998 Sporisorium reilianum 33.98 2.00e-43 170.00
IUUC-Ssc-115434 Sus scrofa 34.07 1.00e-100 359.00
IUUC-Tgu-116517 Taeniopygia guttata 34.42 2.00e-101 362.00
IUUC-Tru-118174 Takifugu rubripes 33.51 1.00e-101 363.00
IUUC-Tsy-118935 Tarsius syrichta 34.33 2.00e-99 355.00
IUUC-Tni-119744 Tetraodon nigroviridis 33.72 2.00e-100 359.00
IUUC-Tca-121360 Theobroma cacao 74.44 0.00e+00 1149.00
IUUC-Tre-122198 Trichoderma reesei 30.16 2.00e-40 160.00
IUUC-Tvi-122389 Trichoderma virens 25.27 4.00e-36 146.00
IUUC-Tae-125576 Triticum aestivum 68.02 0.00e+00 1026.00
IUUC-Tur-126699 Triticum urartu 66.75 0.00e+00 1011.00
IUUC-Tme-126932 Tuber melanosporum 24.25 3.00e-41 163.00
IUUC-Tbe-127267 Tupaia belangeri 40.98 3.00e-43 169.00
IUUC-Ttr-129153 Tursiops truncatus 34.46 3.00e-101 362.00
IUUC-Uma-129604 Ustilago maydis 34.06 2.00e-40 161.00
IUUC-Vda-129925 Verticillium dahliae 32.19 1.00e-40 161.00
IUUC-Vpa-130553 Vicugna pacos 37.38 2.00e-84 305.00
IUUC-Vvi-130995 Vitis vinifera 74.44 0.00e+00 1120.00
IUUC-Xtr-132346 Xenopus tropicalis 33.98 8.00e-100 357.00
IUUC-Xma-133654 Xiphophorus maculatus 41.45 6.00e-65 239.00
IUUC-Yli-134451 Yarrowia lipolytica 27.81 3.00e-23 103.00
IUUC-Zma-135647 Zea mays 67.54 0.00e+00 991.00
Created Date 25-Jun-2017

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