iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
PINA	HINT
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.30e-08	34.9	280	317

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           H ++v+++af ++ +l+++++   +ik+WDlr++  ++
   Q: 280  HPGPVSSVAFhPNgHLMATSGKERKIKIWDLRKFEEVQ 317
           899********777999***************998877 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MEISSEDNNL MEKVLPPVEQ ESDVELETKV KKYLRGEGAN LETLKDKKLK TQLASREKLY 60
GKSAKAAAKI EKWLLPAEAG YLETEGLEKT WRVKQTDIAN EVDILSSRNQ YDIVLPDFGP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATTTTTATTT TCGGACAGAT CATTTATTTA TTTTTGTAAT ATTTTGTTTT TTCTTCTCGT 60
AAAACCCTAA AATATACAAA ACCCTCAAAT TCAGTCTACC AGCGAGGATC GATGTCGGAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR012952--BING4_C_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08149--BING4CT
PF00400--WD40

SMART

SM01033--BING4CT
SM00320--WD40

Gene Ontology

GO:0030686--C:90S preribosome
GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:0005730--C:nucleolus
GO:0032040--C:small-subunit processome
GO:0000462--P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

ath:AT3G10530

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000921	Aegilops tauschii	61.20	1.00e-172	598.00
IUUC-Atr-002528	Amborella trichopoda	65.03	4.00e-172	597.00
IUUC-Aly-005663	Arabidopsis lyrata	97.57	0.00e+00	1026.00
IUUC-Ang-009764	Aspergillus niger	40.39	2.00e-97	348.00
IUUC-Ame-011572	Astyanax mexicanus	44.42	4.00e-92	331.00
IUUC-Bdi-014915	Brachypodium distachyon	60.45	5.00e-171	593.00
IUUC-Bol-015965	Brassica oleracea	90.13	0.00e+00	922.00
IUUC-Bra-016837	Brassica rapa	89.76	0.00e+00	895.00
IUUC-Cel-018465	Caenorhabditis elegans	39.01	5.00e-88	317.00
IUUC-Cre-022704	Chlamydomonas reinhardtii	44.23	1.00e-122	432.00
IUUC-Cgl-026438	Colletotrichum gloeosporioides	40.23	3.00e-100	358.00
IUUC-Cne-026784	Cryptococcus neoformans	36.88	5.00e-68	251.00
IUUC-Dre-028533	Danio rerio	44.23	2.00e-86	312.00
IUUC-Dse-031280	Dothistroma septosporum	37.12	3.00e-94	338.00
IUUC-Eeu-034982	Erinaceus europaeus	44.74	2.00e-51	195.00
IUUC-Fox-037980	Fusarium oxysporum	38.52	5.00e-95	340.00
IUUC-Fso-038154	Fusarium solani	41.45	2.00e-99	355.00
IUUC-Gmo-039548	Gadus morhua	42.89	1.00e-88	319.00
IUUC-Ggr-039976	Gaeumannomyces graminis	38.87	2.00e-94	339.00
IUUC-Gac-042249	Gasterosteus aculeatus	41.63	5.00e-89	320.00
IUUC-Gma-042693	Glycine max	69.10	0.00e+00	704.00
IUUC-Hvu-047436	Hordeum vulgare	63.42	5.00e-120	423.00
IUUC-Kpa-049329	Komagataella pastoris	39.36	1.00e-89	322.00
IUUC-Lpe-051501	Leersia perrieri	63.08	2.00e-164	575.00
IUUC-Loc-051736	Lepisosteus oculatus	47.31	2.00e-89	322.00
IUUC-Meu-056419	Macropus eugenii	41.13	5.00e-78	284.00
IUUC-Mor-057146	Magnaporthe oryzae	38.89	4.00e-92	331.00
IUUC-Mpo-057512	Magnaporthe poae	42.28	7.00e-96	343.00
IUUC-Mtr-058139	Medicago truncatula	66.54	0.00e+00	682.00
IUUC-Mla-059028	Melampsora laricipopulina	42.74	8.00e-82	296.00
IUUC-Mvi-060533	Microbotryum violaceum	40.21	4.00e-81	295.00
IUUC-Mac-065643	Musa acuminata	66.92	0.00e+00	643.00
IUUC-Ont-071977	Oreochromis niloticus	44.27	7.00e-88	317.00
IUUC-Oba-075525	Oryza barthii	62.31	2.00e-174	604.00
IUUC-Obr-076468	Oryza brachyantha	61.37	3.00e-171	593.00
IUUC-Ogl-077395	Oryza glaberrima	62.31	2.00e-174	604.00
IUUC-Ogu-078730	Oryza glumaepatula	61.74	8.00e-174	602.00
IUUC-Oin-079797	Oryza indica	61.93	3.00e-174	603.00
IUUC-Olo-080539	Oryza longistaminata	61.41	2.00e-171	595.00
IUUC-Oni-082635	Oryza nivara	61.93	7.00e-174	602.00
IUUC-Opu-083733	Oryza punctata	61.67	2.00e-175	607.00
IUUC-Oru-084560	Oryza rufipogon	61.93	3.00e-174	603.00
IUUC-Osa-085463	Oryza sativa	61.74	9.00e-174	602.00
IUUC-Ola-086667	Oryzias latipes	45.34	2.00e-99	355.00
IUUC-Olu-087881	Ostreococcus lucimarinus	42.52	1.00e-104	372.00
IUUC-Pma-094742	Petromyzon marinus	41.73	2.00e-84	305.00
IUUC-Ppa-095230	Physcomitrella patens	47.31	6.00e-129	453.00
IUUC-Pop-099756	Populus trichocarpa	70.97	0.00e+00	716.00
IUUC-Ppe-101354	Prunus persica	72.07	0.00e+00	693.00
IUUC-Pte-104146	Pyrenophora teres	39.71	5.00e-88	317.00
IUUC-Pyt-104559	Pyrenophora triticirepentis	37.78	2.00e-88	318.00
IUUC-Sce-106227	Saccharomyces cerevisiae	41.03	2.00e-96	345.00
IUUC-Sja-107925	Schizosaccharomyces japonicus	40.18	5.00e-96	344.00
IUUC-Spo-108359	Schizosaccharomyces pombe	42.55	7.00e-93	333.00
IUUC-Smo-108814	Selaginella moellendorffii	52.05	1.00e-126	446.00
IUUC-Sit-110158	Setaria italica	62.38	6.00e-165	573.00
IUUC-Sly-111569	Solanum lycopersicum	70.83	0.00e+00	662.00
IUUC-Stu-112403	Solanum tuberosum	70.98	0.00e+00	665.00
IUUC-Sbi-114817	Sorghum bicolor	62.50	2.00e-152	531.00
IUUC-Sre-115150	Sporisorium reilianum	42.69	3.00e-91	328.00
IUUC-Tru-118535	Takifugu rubripes	42.38	1.00e-93	336.00
IUUC-Tca-121165	Theobroma cacao	73.13	0.00e+00	727.00
IUUC-Tre-122114	Trichoderma reesei	40.76	5.00e-103	367.00
IUUC-Tvi-122437	Trichoderma virens	42.67	5.00e-102	364.00
IUUC-Tae-125874	Triticum aestivum	61.20	1.00e-172	598.00
IUUC-Tur-126307	Triticum urartu	58.32	4.00e-167	580.00
IUUC-Tme-127208	Tuber melanosporum	41.49	3.00e-101	361.00
IUUC-Ttr-129047	Tursiops truncatus	40.46	1.00e-90	326.00
IUUC-Uma-129320	Ustilago maydis	42.56	4.00e-90	325.00
IUUC-Vda-129926	Verticillium dahliae	38.60	6.00e-97	347.00
IUUC-Vvi-131643	Vitis vinifera	71.11	0.00e+00	728.00
IUUC-Yli-134674	Yarrowia lipolytica	42.45	2.00e-95	342.00
IUUC-Zma-135903	Zea mays	62.17	2.00e-149	521.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence