iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-007168

UUCD1 version

UUC-ArT-00978

Ensembl Protein ID

AT3G13430.4

UniProt Accession

Q9LJE9; Q9LJE9_ARATH

Genbank Protein ID

AEE75347.1; AEE75348.1; AEE75349.1; ANM64126.1; BAB01747.1

Protein Name

RING/U-box superfamily protein

Genbank Nucleotide ID

CP002686; CP002686; CP002686; CP002686; AP000603

Gene Name

At3g13430

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT3G13430	AT3G13430.4	AT3G13430.4

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	4.10e-07	31.3	225	266

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf...kdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C++Cl+df   ++  + +pC+H fh dCl  w         + +CP+Cr
   Q: 225  CSVCLDDFeigME-AKEMPCKHKFHSDCLLPW------LELHSSCPVCR 266
           ********77655.778***************......**********8 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MEDASETSYW CHMCSRSVIP LIQDEIIKCN FCQSGFVEEM DNNDDHQAAD SLWTPILMEM 60
MNNNHDQHST NQEDSESILE DEDEDEDDGD DGDQNNDGEI DITHQLEEIR RIRTRHSTAI 120

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Nucleotide Sequence
(Fasta)

TGAGATTTGA TTAGATTAAT AATTTTGAAA AAGGGGTCAA AGACTCAAAA AAGTCTGCGT 60
GGATCTCCAG CCGTTTTCAG ACACTTACCC ACAAAATATT CCTCTCGGCG ATGATCCCTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0000209--P:protein polyubiquitination
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process

KEGG

ath:AT3G13430

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005488	Arabidopsis lyrata	83.44	2.00e-134	471.00
IUUC-Bol-015860	Brassica oleracea	69.93	6.00e-97	347.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence