iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007376

Ensembl Protein ID

AT3G15610.1

UniProt Accession

Q9LW17; Q9LW17_ARATH

Genbank Protein ID

AAN72058.1; AAO30083.1; AEE75702.1; BAB02292.1

Protein Name

Expressed protein; Putative uncharacterized protein At3g15610; Transducin/WD40 repeat-like superfamily protein; WD-40 repeat protein-like

Genbank Nucleotide ID

BT002047; BT003420; CP002686; AB017071

Gene Name

At3g15610

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT3G15610	AT3G15610.1	AT3G15610.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.40e-27	94.2	268	298
UBD/Beta-Prp	8.20e-47	160.7	25	217

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd..tllvsGsdDgtikvWD 29
           gH ++v+c++f ++   + +sGs Dgti++W 
   Q: 268  GHHGPVHCVRFaPTgeSY-ASGSEDGTIRIWQ 298
           899*********554677.************6 PP

UBD/Beta-Prp

   S: 18   f..spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklvsGs 113
              +pd+ +l+++s+d+   + + +tg+ + +++gh+++v++ ++++++   +++s D  +k+wd  tg+ +h+++ h++ v++++fs+++++l++G+
   Q: 25   SpiTPDGFFLISASKDSQPMLRNGETGDWIGTFEGHKGAVWSSCLDNNALRAASASADFSAKLWDALTGDVLHSFE-HKHIVRACAFSQDTKYLITGG 121
           255799999****************************************9**************************.********************* PP
   S: 114  hdrtirvwdletgqclee.tlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlq 210
             +++rv+dl+      + +++   ++ + + +h+d+ +l s+++ + vrlWd+++gk+++tl+   +++v+s +++++g+++ + ++ +tvk+wd  
   Q: 122  FEKILRVFDLNRLDAPPTeIDKSPGSIRTLTWLHGDQTILSSCTDIGGVRLWDVRSGKIVQTLET--KSPVTSAEVSQDGRYITT-ADGSTVKFWDAN 216
           **********999888873555555555555567777899999999*****************75..************977655.6789******87 PP
   S: 211  t 211
           +
   Q: 217  H 217
           5 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MEKKKVATPL VCHGHSRPVV DLFYSPITPD GFFLISASKD SQPMLRNGET GDWIGTFEGH 60
KGAVWSSCLD NNALRAASAS ADFSAKLWDA LTGDVLHSFE HKHIVRACAF SQDTKYLITG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TCAAAATTGA AGAAGACAAA GAAATAGCTT CCCGAAATAG AAATCTCTCA GACATATAAC 60
AATAGCTTCC TTCTTCTTCT TACAGTTACT TTCTTCTTCG ATTAGCCACT TTTTTTTCTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005829--C:cytosol

KEGG

ath:AT3G15610

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000668	Aegilops tauschii	80.59	1.00e-156	545.00
IUUC-Atr-002571	Amborella trichopoda	81.25	4.00e-160	556.00
IUUC-Aly-005729	Arabidopsis lyrata	97.36	0.00e+00	669.00
IUUC-Afu-008942	Aspergillus fumigatus	32.07	2.00e-43	169.00
IUUC-Ani-009394	Aspergillus nidulans	40.06	1.00e-55	209.00
IUUC-Ame-011328	Astyanax mexicanus	51.19	2.00e-75	275.00
IUUC-Dre-028457	Danio rerio	50.65	3.00e-80	291.00
IUUC-Gma-043984	Glycine max	81.98	3.00e-166	577.00
IUUC-Hvu-047544	Hordeum vulgare	80.88	1.00e-158	551.00
IUUC-Lch-050078	Latimeria chalumnae	52.23	7.00e-79	286.00
IUUC-Mtr-058421	Medicago truncatula	80.95	7.00e-162	562.00
IUUC-Mac-065617	Musa acuminata	82.30	1.00e-161	561.00
IUUC-Nfi-068553	Neosartorya fischeri	40.00	8.00e-55	206.00
IUUC-Opr-071055	Ochotona princeps	39.38	6.00e-47	180.00
IUUC-Obr-076864	Oryza brachyantha	78.82	9.00e-158	548.00
IUUC-Oin-079631	Oryza indica	78.01	3.00e-156	543.00
IUUC-Ome-081693	Oryza meridionalis	77.65	2.00e-154	537.00
IUUC-Ppa-095206	Physcomitrella patens	70.29	7.00e-135	472.00
IUUC-Pop-099753	Populus trichocarpa	82.85	2.00e-165	573.00
IUUC-Ppe-102035	Prunus persica	81.82	1.00e-158	551.00
IUUC-Pgr-103581	Puccinia graminis	44.37	5.00e-63	233.00
IUUC-Ptt-103862	Puccinia triticina	44.59	1.00e-61	229.00
IUUC-Sit-110760	Setaria italica	81.01	6.00e-163	565.00
IUUC-Sly-111555	Solanum lycopersicum	76.08	2.00e-153	534.00
IUUC-Stu-111953	Solanum tuberosum	76.66	2.00e-154	537.00
IUUC-Tru-117558	Takifugu rubripes	52.56	5.00e-79	287.00
IUUC-Tni-120330	Tetraodon nigroviridis	52.72	3.00e-76	278.00
IUUC-Tca-121759	Theobroma cacao	80.52	6.00e-163	565.00
IUUC-Tre-122163	Trichoderma reesei	39.33	1.00e-47	183.00
IUUC-Tme-127137	Tuber melanosporum	45.73	9.00e-63	233.00
IUUC-Tbe-127324	Tupaia belangeri	36.42	1.00e-23	102.00
IUUC-Uma-129433	Ustilago maydis	45.95	9.00e-61	226.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence