iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099212

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000345

Gene Name

POPTRDRAFT_201517; POPTR_0009s11270g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0009s11270	POPTR_0009s11270.1	POPTR_0009s11270.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.20e-31	108.5	208	244
UBD/Beta-Prp	5.40e-48	164.8	105	327

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvll 36
           H d v+cl++  d +ll sGs+D+t+kvW++++ ++l
   Q: 208  HFDAVSCLSLnEDqGLLYSGSWDKTLKVWRTSDYKCL 244
           8899******8557****************8876665 PP

UBD/Beta-Prp

   S: 16   vkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdls........................ 82
           ++   +++ll+tgs+++ i+vw++ +   ++ ++++++ v+a+ ++ d   + tg++D+ i+vw  s                        
   Q: 105  LAA--SGDLLFTGSDSKNIRVWNNLK--EFAGFKSNSGLVKAIVIHGD--KIFTGHQDGKIRVWRASsrnpsaykrvgtvptlkdyvkssv 189
           444..899****************99..557*****************..69************555556669999999999999999999 PP
   S: 83   .........tgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlW 164
                        v  +k h d v +ls+++++  l sGs+d+t++vw ++ ++cle   + hd+++n+vv+ ++++l+++Gs+D+tv++W
   Q: 190  npknyvevrRHRNVLRIK-HFDAVSCLSLNEDQGLLYSGSWDKTLKVWRTSDYKCLE-SINAHDDAINSVVT-GFDSLVFTGSADGTVKVW 277
           777666654444444444.9999999*******************************.88889999999865.669*************** PP
   S: 165  dl......ktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdl 209
           +          +l++tl + h+++v+ ls+++++  +  gs dg v++w+ 
   Q: 278  RRelqgrrTGHFLVQTLLK-HENAVTALSVNQESAVIYCGSSDGLVNFWER 327
           **99999555679999999.*****************************86 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MFAELSIHRP TFGSLLHSDP AFFSNQEEVD DSSNKNSPTS SNMSPRYYNG STPPSGEGSP 60
YLSPWNQPSP YTKSPWVIPS PVNHSFSKNG LVGSLAREEG HVYSLAASGD LLFTGSDSKN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTTTGCAG AACTCTCAAT ACACCGACCA ACTTTTGGTT CTCTCTTGCA TTCAGATCCT 60
GCTTTTTTTT CTAATCAAGA AGAGGTCGAC GATTCTAGCA ACAAAAACAG CCCAACATCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

KEGG

pop:POPTR_0009s11270g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002457	Amborella trichopoda	69.32	6.00e-172	596.00
IUUC-Ath-006874	Arabidopsis thaliana	69.29	1.00e-147	515.00
IUUC-Bol-016061	Brassica oleracea	70.03	5.00e-143	499.00
IUUC-Bra-017040	Brassica rapa	60.99	2.00e-147	515.00
IUUC-Mtr-057793	Medicago truncatula	62.04	2.00e-157	548.00
IUUC-Mac-065108	Musa acuminata	53.02	7.00e-101	360.00
IUUC-Ppa-095309	Physcomitrella patens	47.73	1.00e-77	283.00
IUUC-Ppe-101355	Prunus persica	69.39	1.00e-171	595.00
IUUC-Smo-108947	Selaginella moellendorffii	36.39	2.00e-47	182.00
IUUC-Sly-111118	Solanum lycopersicum	63.78	2.00e-146	511.00
IUUC-Stu-112572	Solanum tuberosum	62.31	7.00e-145	506.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence