iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-006987

UUCD1 version

UUC-ArT-01518

Ensembl Protein ID

AT3G19140.1

UniProt Accession

Q9LJL6; Q4FE36; ATL62_ARATH

Genbank Protein ID

AAZ14059.1; BAB02954.1; AEE76197.1

Protein Name

Putative RING-H2 finger protein ATL62; RING-type E3 ubiquitin transferase ATL62

Genbank Nucleotide ID

DQ086855; AP000419; CP002686

Gene Name

ATL62; At3g19140; MVI11.4

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT3G19140	AT3G19140.1	AT3G19140.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
Protein Expression/Proteomics

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 activity/RING/RING	RING	20435904

Classification

Family	E-value	Score	Start	End
E3 activity/RING/RING	4.20e-05	24.9	79	121

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf..kdgplvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           C +Cl+ f  +d  +vlp C+H+fh+d    w           +CP Cr
   Q: 79   CVVCLSKFidEDKARVLPsCNHCFHFDFTDTW------LHSDYTCPNCR 121
           ********77444899999*************......99********8 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MNEDALEAVR SRTFFAILTV FYSIFRCCLA YCNKGDDDHL IHPSHSLHVI KATGINPSVL 60
LSIPVVSFNA NAFKDNIECV VCLSKFIDED KARVLPSCNH CFHFDFTDTW LHSDYTCPNC 120

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Nucleotide Sequence
(Fasta)

ATGAACGAAG ATGCTCTCGA AGCTGTACGA TCTCGCACAT TCTTCGCGAT TCTGACTGTG 60
TTTTATTCTA TATTTCGTTG TTGTCTTGCT TATTGCAACA AAGGTGACGA TGATCATCTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0808--Transferase
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0005886--C:plasma membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0048577--P:negative regulation of short-day photoperiodism, flowering
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

ath:AT3G19140

Orthology

iUUCD ID

Species

Identity

E-value

Score

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence