iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
iRefIndex	Mentha
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 adaptor/Cullin RING/SCF/F-box	F-box	17435085

Classification

Family	E-value	Score	Start	End
E3 adaptor/Cullin RING/SCF/F-box	0.015	16.3	34	76

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/SCF/F-box

   S: 96   egpdaglldrlpeeilveilklldkeellraarvcrrwqelas 138
           e+ d + + +lp+++l +i+++l++ +  r+++v++rw  +  
   Q: 34   EDGDYDFTANLPDDCLAHIFQFLSAGDRKRCSLVSKRWLLVDG 76
           566889999*****************************87765 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MGQAPSSPAE PNVRDTSLCL WSPEFLDCES IGFEDGDYDF TANLPDDCLA HIFQFLSAGD 60
RKRCSLVSKR WLLVDGQNRH RLSLDAKSEI LPFLPCIFNR FDSVTKLALR CDRRSFSLSD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAGAAAAA ATGGTGGCCT CGAAGGTGAG AGTTGTTGAC TACAGTCCGC AGAAAAAACA 60
TTAAAAACGA AAGATACTGA AAAAAAAAAA AAAACTCACG AGTCGTGTGT GACTCGGTGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0433--Leucine-rich repeat
KW-1185--Reference proteome
KW-0677--Repeat

Interpro

IPR001810--F-box_dom
IPR032675--L_dom-like
IPR001611--Leu-rich_rpt
IPR006553--Leu-rich_rpt_Cys-con_subtyp

Pfam

PF00646--F-box
PF13516--LRR_6

SMART

SM00256--FBOX
SM00367--LRR_CC

Gene Ontology

GO:0005737--C:cytoplasm
GO:0004842--F:ubiquitin-protein transferase activity

KEGG

ath:AT3G50080

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005610	Arabidopsis lyrata	87.55	0.00e+00	859.00
IUUC-Bol-015625	Brassica oleracea	74.14	0.00e+00	719.00
IUUC-Bra-016636	Brassica rapa	76.05	0.00e+00	726.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence