iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-006729

Ensembl Protein ID

AT3G51930.1

UniProt Accession

Q9SV11; Q9SV11_ARATH

Genbank Protein ID

AAP37694.1; AEE78864.1; BAF00246.1; CAB41313.1

Protein Name

At3g51930; Putative uncharacterized protein At3g51930; Putative uncharacterized protein F4F15.40; Transducin/WD40 repeat-like superfamily protein

Genbank Nucleotide ID

BT008335; CP002686; AK228303; AL049711

Gene Name

F4F15.40; At3g51930

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT3G51930	AT3G51930.1	AT3G51930.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.10e-23	81.4	173	208

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclafsd.tllvsGsdDgtikvWDlrtgvllk 37
           H+ds++cla    +++ sGs+D+t+kvW+l++ ++l 
   Q: 173  HADSISCLAV-HaGIIYSGSWDKTLKVWRLSDLKCLE 208
           9********9.559******************99986 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MVRSIQEGVL MSSSSSSTTS NSNDSDGSLS PSASTKSFVL NTLRPPITGA YKPLAVLSAH 60
VGSVSSLALC GEFLLSASQG KDIIVWQQPD LKIFAKFGQG DGSVKALVSV GSKVFTAHQD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TCCACATATG GTCCAATTAA CATCACTGGT CAAACAAGAG AACAATGATC AATCCGTTAC 60
TATGATATGC ACACATTAAA TTTAAGGCTC CTGAAGTGGT TTCATATATT ATAAGATTCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

KEGG

ath:AT3G51930

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002847	Amborella trichopoda	62.46	1.00e-121	429.00
IUUC-Aly-005620	Arabidopsis lyrata	95.65	0.00e+00	715.00
IUUC-Bdi-014229	Brachypodium distachyon	54.57	7.00e-95	340.00
IUUC-Bol-015324	Brassica oleracea	85.38	0.00e+00	647.00
IUUC-Bra-017033	Brassica rapa	84.20	0.00e+00	656.00
IUUC-Gma-043773	Glycine max	74.26	4.00e-141	493.00
IUUC-Hvu-047162	Hordeum vulgare	54.00	4.00e-75	274.00
IUUC-Lpe-050845	Leersia perrieri	53.76	1.00e-88	319.00
IUUC-Mtr-058525	Medicago truncatula	69.62	3.00e-142	497.00
IUUC-Mac-064928	Musa acuminata	60.97	6.00e-100	356.00
IUUC-Oba-075989	Oryza barthii	59.18	1.00e-112	399.00
IUUC-Obr-076522	Oryza brachyantha	58.27	5.00e-111	393.00
IUUC-Ogl-077747	Oryza glaberrima	58.11	4.00e-111	394.00
IUUC-Ogu-078306	Oryza glumaepatula	58.84	1.00e-110	392.00
IUUC-Oin-079397	Oryza indica	57.22	1.00e-110	392.00
IUUC-Olo-080627	Oryza longistaminata	55.07	6.00e-75	273.00
IUUC-Ome-081295	Oryza meridionalis	56.94	3.00e-110	390.00
IUUC-Oni-082259	Oryza nivara	58.11	4.00e-111	394.00
IUUC-Opu-083686	Oryza punctata	58.50	7.00e-111	393.00
IUUC-Oru-084598	Oryza rufipogon	57.22	1.00e-110	392.00
IUUC-Osa-085705	Oryza sativa	58.11	4.00e-107	380.00
IUUC-Ppa-095309	Physcomitrella patens	44.69	1.00e-77	282.00
IUUC-Pop-099167	Populus trichocarpa	75.70	3.00e-151	526.00
IUUC-Ppe-101179	Prunus persica	72.78	1.00e-150	525.00
IUUC-Sit-109966	Setaria italica	58.50	2.00e-104	372.00
IUUC-Sly-111222	Solanum lycopersicum	67.02	2.00e-131	461.00
IUUC-Stu-112315	Solanum tuberosum	71.24	6.00e-140	489.00
IUUC-Sbi-114323	Sorghum bicolor	54.11	3.00e-100	358.00
IUUC-Tca-121448	Theobroma cacao	74.51	6.00e-148	516.00
IUUC-Tae-123437	Triticum aestivum	55.94	5.00e-104	370.00
IUUC-Vvi-131470	Vitis vinifera	70.99	3.00e-142	497.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence