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Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Ath-006658
UUCD1 version UUC-ArT-01535
Ensembl Protein ID AT4G05420.1
UniProt Accession Q9M0V3; Q0WL42; Q8VY31; DDB1A_ARATH
Genbank Protein ID CAB81084.1; AEE82517.1; AAL66955.1; AAN71904.1; BAF02165.1
Protein Name DNA damage-binding protein 1a; UV-damaged DNA-binding protein 1a
Genbank Nucleotide ID AL161503; CP002687; AY074257; BT001905; AK230366
Gene Name DDB1A; At4g05420; C6L9.100
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT4G05420 AT4G05420.2 AT4G05420.2
AT4G05420 AT4G05420.1 AT4G05420.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
iRefIndexPINAHINTMentha
Protein Expression/Proteomics
GPMDB
Status Reviewed
Details
Family Domain References (PMIDs)
E3 adaptor/Cullin RING/DCX/DDB1 DDB1 20622147; 20128879
Classification
Family E-value Score Start End
E3 adaptor/Cullin RING/DCX/DDB1 0 1715.8 734 1088
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DDB1
   S: 782  elseleenevnfllvlDkntfelllaqdlrewEtavsllSqklkdDseeyyvvktalvlpeenelkkgrilvfsvedslklkLltvaekkvkgavi 877
           + s++ee+e++f+++lD++tfe++++++l+++E+++s+lS+++++D+++yy+v+ta+vlpeene++kgrilvf+ved+   +L+ +aek++kgav+
   Q: 734  NQSNSEESEMHFVRLLDDQTFEFMSTYPLDSFEYGCSILSCSFTEDKNVYYCVGTAYVLPEENEPTKGRILVFIVEDG---RLQLIAEKETKGAVY 826
           5789**************************************************************************...*************** PP
   S: 878  dlvklNgkllaainseirlyewkvmgtdekelrkeCernntilaLtlktrkdfivVgDlmrsvtLllykdlegsfeEsardynlewmsaveilndd 973
           +l+++Ngkllaain++i+ly+w++++++++el++eC+++++ilaL+++tr+dfivVgDlm+s++Lllyk++eg++eE+ardyn++wmsaveil+dd
   Q: 827  SLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLLYKHEEGAIEERARDYNANWMSAVEILDDD 922
           ************************************************************************************************ PP
   S: 974  iflgaencgNlfvvkkdikagltdeerslleevgefrlgefvevfrfgtlvlqdvgerevnrssevifgtengeigvilrlrrellkflrnlestl 1069
           i+lgaen++Nl++vkk+ ++g+tdeer +le+vge++lgefv++fr+g+lv++ + ++e++++++vifgt+ng+igvi++l++e+++fl++l+s+l
   Q: 923  IYLGAENNFNLLTVKKN-SEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLP-DSEIGQIPTVIFGTVNGVIGVIASLPQEQYTFLEKLQSSL 1016
           *****************.***********************************98.**************************************** PP
   S: 1070 kkvikrvakieHssyRsFetekrterasgfvdgdLiesilDlsrdkavdilkvlyekrwnskkevsveeivKlveelkrlh 1150
           +kvik+v++++H+++RsF++ekrt++a++f+dgdLies+lDlsr+k++di+k++         +v+vee++K+veel+rlh
   Q: 1017 RKVIKGVGGLSHEQWRSFNNEKRTAEARNFLDGDLIESFLDLSRNKMEDISKSM---------NVQVEELCKRVEELTRLH 1088
           ******************************************************.........9***************98 PP
   
Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description


     Component of light signal transduction machinery. Involved in repression of photomorphogenesis in darkness by participating in the CDD complex, a complex probably required to regulate the activity of ubiquitin conjugating enzymes (E2s). Repression of photomorphogenesis is probably mediated by ubiquitination and subsequent degradation of photomorphogenesis-promoting factors such as HY5, HYH and LAF1. Plays a role in DNA repair by forming with DDB2 the UV-damaged DNA-binding protein complex (UV-DDB). Component of the CUL4-RBX1-DDB1-PRL1 E3 ubiquitin-protein ligase complex.
 Component of light signal transduction machinery. Involved in repression of photomorphogenesis in darkness by participating in the CDD complex, a complex probably required to regulate the activity of ubiquitin conjugating enzymes (E2s). Repression of photomorphogenesis is probably mediated by ubiquitination and subsequent degradation of photomorphogenesis-promoting factors such as HY5, HYH and LAF1. Plays a role in DNA repair by forming with DDB2 the UV-damaged DNA-binding protein complex (UV-DDB). Component of the CUL4-RBX1-DDB1-PRL1 E3 ubiquitin-protein ligase complex.
Protein Sequence
(Fasta)
MSSWNYVVTA HKPTSVTHSC VGNFTSPQEL NLIVAKCTRI EIHLLTPQGL QPMLDVPIYG 60
RIATLELFRP HGEAQDFLFI ATERYKFCVL QWDPESSELI TRAMGDVSDR IGRPTDNGQI 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Ath-006658|E3,DDB1|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CGAAAGTTGT CTTTCTTCTT CCTTGTTCGA TTTTCGCCTC CTTTGGCTTT TCATTCTCTC 60
TCTAACTTCT CTATGTTAAA ATTCCGAAAG CTCGATTCAG AAATCTAGAA GCTTCCTCGA 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Ath-006658|E3,DDB1|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0025--Alternative splicing
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0227--DNA damage
KW-0234--DNA repair
KW-0238--DNA-binding
KW-0539--Nucleus
KW-0607--Phytochrome signaling pathway
KW-1185--Reference proteome
KW-0833--Ubl conjugation pathway
Interpro

IPR004871--Cleavage/polyA-sp_fac_asu_C
IPR031297--DDB1
IPR015943--WD40/YVTN_repeat-like_dom
IPR017986--WD40_repeat_dom
Pfam

PF03178--CPSF_A
Gene Ontology

GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:0005737--C:cytoplasm
GO:0005829--C:cytosol
GO:0005634--C:nucleus
GO:0003684--F:damaged DNA binding
GO:0006289--P:nucleotide-excision repair
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0016567--P:protein ubiquitination
GO:0009585--P:red, far-red light phototransduction
KEGG ath:AT4G05420
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000120 Aegilops tauschii 78.75 0.00e+00 1837.00
IUUC-Aml-002096 Ailuropoda melanoleuca 52.62 0.00e+00 1184.00
IUUC-Atr-002742 Amborella trichopoda 85.77 0.00e+00 1921.00
IUUC-Apl-003624 Anas platyrhynchos 51.98 0.00e+00 1142.00
IUUC-Aca-005085 Anolis carolinensis 52.62 0.00e+00 1177.00
IUUC-Aly-005857 Arabidopsis lyrata 99.17 0.00e+00 2209.00
IUUC-Acl-008149 Aspergillus clavatus 30.24 2.00e-122 433.00
IUUC-Afl-008549 Aspergillus flavus 30.59 9.00e-124 437.00
IUUC-Afu-009076 Aspergillus fumigatus 31.11 5.00e-134 471.00
IUUC-Ani-009302 Aspergillus nidulans 28.41 5.00e-108 385.00
IUUC-Ang-009636 Aspergillus niger 29.33 3.00e-109 389.00
IUUC-Aor-010073 Aspergillus oryzae 31.00 5.00e-132 464.00
IUUC-Ate-010422 Aspergillus terreus 30.45 5.00e-128 451.00
IUUC-Ame-011643 Astyanax mexicanus 46.51 0.00e+00 986.00
IUUC-Bta-012494 Bos taurus 52.62 0.00e+00 1183.00
IUUC-Bci-013957 Botrytis cinerea 30.05 1.00e-115 410.00
IUUC-Bdi-014186 Brachypodium distachyon 82.20 0.00e+00 1848.00
IUUC-Bol-015922 Brassica oleracea 96.78 0.00e+00 2169.00
IUUC-Bra-017300 Brassica rapa 96.60 0.00e+00 2159.00
IUUC-Cja-019165 Callithrix jacchus 52.53 0.00e+00 1182.00
IUUC-Cfa-020406 Canis familiaris 52.62 0.00e+00 1184.00
IUUC-Cpo-022154 Cavia porcellus 52.62 0.00e+00 1184.00
IUUC-Cre-022557 Chlamydomonas reinhardtii 49.56 0.00e+00 1003.00
IUUC-Csa-024061 Chlorocebus sabaeus 52.53 0.00e+00 1182.00
IUUC-Cho-024554 Choloepus hoffmanni 47.65 1.00e-134 474.00
IUUC-Cin-025466 Ciona intestinalis 48.53 0.00e+00 1060.00
IUUC-Csv-026370 Ciona savignyi 47.85 0.00e+00 951.00
IUUC-Cgl-026595 Colletotrichum gloeosporioides 28.62 2.00e-115 410.00
IUUC-Cme-027342 Cyanidioschyzon merolae 30.43 9.00e-136 478.00
IUUC-Dre-027448 Danio rerio 51.96 3.00e-163 567.00
IUUC-Dno-029794 Dasypus novemcinctus 53.10 0.00e+00 1129.00
IUUC-Dor-030789 Dipodomys ordii 46.75 2.00e-120 426.00
IUUC-Dse-031491 Dothistroma septosporum 30.27 2.00e-131 463.00
IUUC-Dme-031940 Drosophila melanogaster 46.74 0.00e+00 986.00
IUUC-Eca-033777 Equus caballus 52.36 0.00e+00 1176.00
IUUC-Eeu-034900 Erinaceus europaeus 50.50 1.00e-165 577.00
IUUC-Fca-035869 Felis catus 52.62 0.00e+00 1184.00
IUUC-Fal-036777 Ficedula albicollis 52.39 0.00e+00 1170.00
IUUC-Fox-037954 Fusarium oxysporum 28.27 1.00e-121 430.00
IUUC-Gmo-038815 Gadus morhua 47.60 3.00e-154 538.00
IUUC-Gga-040995 Gallus gallus 52.44 0.00e+00 1178.00
IUUC-Gac-042390 Gasterosteus aculeatus 52.23 0.00e+00 1110.00
IUUC-Gma-042904 Glycine max 90.17 0.00e+00 1982.00
IUUC-Ggo-044891 Gorilla gorilla 52.39 0.00e+00 1177.00
IUUC-Hsa-046709 Homo sapiens 52.53 0.00e+00 1182.00
IUUC-Hvu-047504 Hordeum vulgare 82.20 0.00e+00 1862.00
IUUC-Itr-048678 Ictidomys tridecemlineatus 52.71 0.00e+00 1184.00
IUUC-Lch-050565 Latimeria chalumnae 52.61 0.00e+00 1180.00
IUUC-Lpe-051260 Leersia perrieri 83.30 0.00e+00 1863.00
IUUC-Loc-052091 Lepisosteus oculatus 47.74 0.00e+00 793.00
IUUC-Lma-053246 Leptosphaeria maculans 29.17 4.00e-123 435.00
IUUC-Laf-053502 Loxodonta africana 52.71 0.00e+00 1183.00
IUUC-Mcc-054802 Macaca mulatta 53.04 0.00e+00 1173.00
IUUC-Meu-056808 Macropus eugenii 54.38 0.00e+00 780.00
IUUC-Mor-057253 Magnaporthe oryzae 28.30 1.00e-107 384.00
IUUC-Mtr-057743 Medicago truncatula 89.44 0.00e+00 1998.00
IUUC-Mla-059154 Melampsora laricipopulina 26.13 1.00e-91 330.00
IUUC-Mga-059824 Meleagris gallopavo 52.08 0.00e+00 1092.00
IUUC-Mvi-060279 Microbotryum violaceum 28.99 3.00e-120 426.00
IUUC-Mmr-061215 Microcebus murinus 52.27 0.00e+00 1172.00
IUUC-Mdo-062028 Monodelphis domestica 50.31 0.00e+00 934.00
IUUC-Mmu-064327 Mus musculus 52.71 0.00e+00 1183.00
IUUC-Mac-065445 Musa acuminata 85.95 0.00e+00 1921.00
IUUC-Mpu-065814 Mustela putorius furo 50.79 0.00e+00 1121.00
IUUC-Mlu-067136 Myotis lucifugus 52.71 0.00e+00 1177.00
IUUC-Nfi-068355 Neosartorya fischeri 31.26 5.00e-128 451.00
IUUC-Ncr-068620 Neurospora crassa 29.65 2.00e-123 436.00
IUUC-Nle-069566 Nomascus leucogenys 52.95 0.00e+00 1165.00
IUUC-Opr-070915 Ochotona princeps 51.37 0.00e+00 876.00
IUUC-Ont-071753 Oreochromis niloticus 52.53 0.00e+00 1176.00
IUUC-Oan-073187 Ornithorhynchus anatinus 52.79 0.00e+00 1071.00
IUUC-Ocu-074619 Oryctolagus cuniculus 52.62 0.00e+00 1184.00
IUUC-Oba-075091 Oryza barthii 80.29 0.00e+00 1260.00
IUUC-Obr-076425 Oryza brachyantha 83.52 0.00e+00 1867.00
IUUC-Ogu-078794 Oryza glumaepatula 83.58 0.00e+00 1871.00
IUUC-Oin-079725 Oryza indica 82.55 0.00e+00 1840.00
IUUC-Olo-080842 Oryza longistaminata 80.19 0.00e+00 1685.00
IUUC-Ome-081818 Oryza meridionalis 83.49 0.00e+00 1868.00
IUUC-Oni-082879 Oryza nivara 82.94 0.00e+00 1849.00
IUUC-Opu-083361 Oryza punctata 82.53 0.00e+00 1862.00
IUUC-Oru-084781 Oryza rufipogon 83.58 0.00e+00 1872.00
IUUC-Osa-086293 Oryza sativa 83.58 0.00e+00 1872.00
IUUC-Ola-086881 Oryzias latipes 52.17 0.00e+00 1164.00
IUUC-Olu-087674 Ostreococcus lucimarinus 55.92 0.00e+00 1171.00
IUUC-Oga-089056 Otolemur garnettii 52.53 0.00e+00 1182.00
IUUC-Oar-089457 Ovis aries 53.13 0.00e+00 1173.00
IUUC-Ptr-091179 Pan troglodytes 52.44 0.00e+00 1160.00
IUUC-Pan-092019 Papio anubis 52.30 0.00e+00 1172.00
IUUC-Psi-093407 Pelodiscus sinensis 52.44 0.00e+00 1154.00
IUUC-Pma-094272 Petromyzon marinus 52.78 0.00e+00 1071.00
IUUC-Pno-094864 Phaeosphaeria nodorum 29.85 3.00e-132 466.00
IUUC-Ppa-095885 Physcomitrella patens 80.37 0.00e+00 1761.00
IUUC-Pfo-096083 Poecilia formosa 52.66 0.00e+00 1175.00
IUUC-Pab-098652 Pongo abelii 50.87 0.00e+00 1081.00
IUUC-Pop-099593 Populus trichocarpa 90.81 0.00e+00 1995.00
IUUC-Pca-100189 Procavia capensis 51.11 0.00e+00 664.00
IUUC-Ppe-101987 Prunus persica 89.07 0.00e+00 1932.00
IUUC-Pva-102605 Pteropus vampyrus 52.44 0.00e+00 1178.00
IUUC-Pgr-103659 Puccinia graminis 25.62 5.00e-72 266.00
IUUC-Ptt-103884 Puccinia triticina 23.23 6.00e-62 232.00
IUUC-Pte-104233 Pyrenophora teres 30.49 3.00e-134 472.00
IUUC-Pyt-104454 Pyrenophora triticirepentis 30.57 1.00e-130 460.00
IUUC-Rno-106004 Rattus norvegicus 52.53 0.00e+00 1182.00
IUUC-Sha-106726 Sarcophilus harrisii 51.34 0.00e+00 1060.00
IUUC-Sja-107864 Schizosaccharomyces japonicus 25.81 1.00e-92 334.00
IUUC-Ssl-108441 Sclerotinia sclerotiorum 30.09 2.00e-109 390.00
IUUC-Smo-108808 Selaginella moellendorffii 79.82 0.00e+00 1833.00
IUUC-Sit-109735 Setaria italica 83.24 0.00e+00 1867.00
IUUC-Sly-111520 Solanum lycopersicum 88.40 0.00e+00 1984.00
IUUC-Sar-113606 Sorex araneus 52.07 2.00e-64 240.00
IUUC-Sbi-114539 Sorghum bicolor 80.51 0.00e+00 1835.00
IUUC-Sre-114936 Sporisorium reilianum 24.97 5.00e-66 246.00
IUUC-Ssc-116038 Sus scrofa 52.53 0.00e+00 1181.00
IUUC-Tgu-117512 Taeniopygia guttata 52.36 0.00e+00 1170.00
IUUC-Tru-117593 Takifugu rubripes 51.79 0.00e+00 1156.00
IUUC-Tsy-119513 Tarsius syrichta 50.96 1.00e-175 610.00
IUUC-Tni-120551 Tetraodon nigroviridis 48.47 0.00e+00 910.00
IUUC-Tca-121505 Theobroma cacao 91.45 0.00e+00 2003.00
IUUC-Tre-122136 Trichoderma reesei 28.14 2.00e-118 419.00
IUUC-Tae-124186 Triticum aestivum 82.20 0.00e+00 1863.00
IUUC-Tur-126451 Triticum urartu 81.31 0.00e+00 1659.00
IUUC-Tme-127057 Tuber melanosporum 31.13 2.00e-129 456.00
IUUC-Ttr-128891 Tursiops truncatus 50.52 0.00e+00 741.00
IUUC-Uma-129583 Ustilago maydis 26.87 5.00e-69 256.00
IUUC-Vpa-130117 Vicugna pacos 49.73 0.00e+00 884.00
IUUC-Vvi-131033 Vitis vinifera 90.45 0.00e+00 2026.00
IUUC-Xtr-131987 Xenopus tropicalis 52.26 0.00e+00 1161.00
IUUC-Xma-134117 Xiphophorus maculatus 51.83 0.00e+00 1145.00
IUUC-Zma-134758 Zea mays 82.92 0.00e+00 1864.00
Created Date 25-Jun-2017

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