iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007497

UUCD1 version

UUC-ArT-01501

Ensembl Protein ID

AT4G11360.1

UniProt Accession

Q9SUS5; Q4TU17; Q9ZT51; RHA1B_ARATH

Genbank Protein ID

AAC68670.1; AAY57605.1; CAB51420.1; CAB81237.1; AEE83001.1; AAL38719.1; AAM51375.1; AAM65159.1

Protein Name

E3 ubiquitin-protein ligase RHA1B; RING-H2 finger A1b; RING-H2 zinc finger protein RHA1b; RING-type E3 ubiquitin transferase RHA1B

Genbank Nucleotide ID

AF078821; DQ059119; AL096882; AL161531; CP002687; AY065243; AY117300; AY087618

Gene Name

RHA1B; At4g11360; F8L21.150

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT4G11360	AT4G11360.1	AT4G11360.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein Expression/Proteomics

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 activity/RING/RING	RING	15644464

Classification

Family	E-value	Score	Start	End
E3 activity/RING/RING	1.50e-08	35.9	85	129

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf..kdgplvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           C +Cl+df  +d  + lp CgHvfh+ Cl +w     + +++++CP+Cr
   Q: 85   CTVCLSDFvsDDKIRQLPkCGHVFHHRCLDRW----IVDCNKITCPICR 129
           9********966699999**************....9***********8 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Possesses E3 ubiquitin-protein ligase activity when associated with the E2 enzyme UBC8 in vitro.

Protein Sequence
(Fasta)

MGLPTDFKEL QIPGYVLKTL YVIGFFRDMV DALCPYIGLP SFLDHNETSR SDPTRLALST 60
SATLANELIP VVRFSDLLTD PEDCCTVCLS DFVSDDKIRQ LPKCGHVFHH RCLDRWIVDC 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTTTGTTTCT ATACCAAGCA AAATATTTTA CTATTTTACA TTATACACTA AATAAGACCC 60
ACCATTGTTG ATCAAATTGA CTATACTTAT CTTGAGCCGC CGGATTCAAT TATTATAACT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0808--Transferase
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0061630--F:ubiquitin protein ligase activity
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0016567--P:protein ubiquitination
GO:0046686--P:response to cadmium ion
GO:0010200--P:response to chitin

KEGG

ath:AT4G11360

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006278	Arabidopsis lyrata	91.08	8.00e-82	294.00
IUUC-Bol-016182	Brassica oleracea	76.64	3.00e-57	213.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence