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Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Ath-007293
Ensembl Protein ID AT4G25120.1
UniProt Accession D1KF50; F4JSH5; Q9SW14; SRS2L_ARATH
Genbank Protein ID ACY64665.1; CAB36754.1; CAB79421.1; AEE85014.2
Protein Name ATP-dependent DNA helicase SRS2-like protein At4g25120; AtSRS2
Genbank Nucleotide ID GQ148553; AL035523; AL161562; CP002687
Gene Name SRS2; At4g25120; F13M23.260
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT4G25120 AT4G25120.1 AT4G25120.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
E3 adaptor/Cullin RING/SCF/F-box 35.29 1.20e-01 37.40 IUUC-Hsa-046650
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description


     ATP-dependent 3'- to 5'-DNA helicase that could disrupt recombinogenic DNA intermediates and facilitate single strand annealing. Unwinds nicked and partial Holliday junctions in vitro. Anneals two single strands into a dsDNA molecule in vitro.
 ATP-dependent 3'- to 5'-DNA helicase that could disrupt recombinogenic DNA intermediates and facilitate single strand annealing. Unwinds nicked and partial Holliday junctions in vitro. Anneals two single strands into a dsDNA molecule in vitro.
Protein Sequence
(Fasta)
MENLPPNRGM WNQEYSHGRI SQSFRSAKPL LDRKRPIENA PNSSNPLPQR MKESMDTESV 60
SHNINFNSTP LMELSANTPY KRLKPEIESY ADGHPCGLRT PPPRFDLDKE IINGFQTDIY 120
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Protein Fasta Sequence


>IUUC-Ath-007293|E3,F-box|Arabidopsis thaliana
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Nucleotide Sequence
(Fasta)
CGAAAGCAAA GGGCCCAGAT GGGCCATAGG CCCAATAATA TCATCTATGG AGAAAAAGGG 60
GGTTTCGTTG TCTCTAGGTT TTTTCAGTCT GACTGATTTC AGTCATTTCG AATTTTCCCA 120
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Nucleotide Fasta Sequence


>IUUC-Ath-007293|E3,F-box|Arabidopsis thaliana
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Sequence Source Ensembl
Keyword

KW-0025--Alternative splicing
KW-0067--ATP-binding
KW-0181--Complete proteome
KW-0238--DNA-binding
KW-0347--Helicase
KW-0378--Hydrolase
KW-0547--Nucleotide-binding
KW-0539--Nucleus
KW-1185--Reference proteome
Interpro

IPR014017--DNA_helicase_UvrD-like_C
IPR000212--DNA_helicase_UvrD/REP
IPR027417--P-loop_NTPase
IPR014016--UvrD-like_ATP-bd
IPR034739--UvrD/AddA_N
PROSITE

PS51198--UVRD_HELICASE_ATP_BIND
PS51217--UVRD_HELICASE_CTER
Pfam

PF00580--UvrD-helicase
PF13361--UvrD_C
Gene Ontology

GO:0005634--C:nucleus
GO:0043138--F:3'-5' DNA helicase activity
GO:0005524--F:ATP binding
GO:0004003--F:ATP-dependent DNA helicase activity
GO:0003677--F:DNA binding
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000743 Aegilops tauschii 47.62 2.00e-86 312.00
IUUC-Aml-001396 Ailuropoda melanoleuca 24.48 2.00e-03 38.10
IUUC-Atr-002826 Amborella trichopoda 53.43 0.00e+00 1151.00
IUUC-Apl-003317 Anas platyrhynchos 31.43 2.00e-03 37.70
IUUC-Aca-004498 Anolis carolinensis 40.91 2.00e-03 37.70
IUUC-Ani-009226 Aspergillus nidulans 27.88 6.00e-50 192.00
IUUC-Ate-010526 Aspergillus terreus 25.94 2.00e-47 184.00
IUUC-Ame-011808 Astyanax mexicanus 37.88 7.00e-04 37.70
IUUC-Bgr-012240 Blumeria graminis 29.87 5.40e-01 27.30
IUUC-Bta-013250 Bos taurus 24.48 1.00e-04 41.60
IUUC-Bol-015348 Brassica oleracea 82.33 0.00e+00 1920.00
IUUC-Cja-019638 Callithrix jacchus 37.68 2.00e-03 37.70
IUUC-Cfa-020195 Canis familiaris 24.48 4.00e-04 40.00
IUUC-Cpo-022269 Cavia porcellus 22.75 1.00e-03 38.50
IUUC-Csa-024060 Chlorocebus sabaeus 24.19 2.00e-03 38.10
IUUC-Dre-028083 Danio rerio 37.88 3.00e-04 40.40
IUUC-Dno-029203 Dasypus novemcinctus 36.76 7.00e-04 39.30
IUUC-Dor-030477 Dipodomys ordii 37.68 2.00e-03 37.70
IUUC-Ete-032861 Echinops telfairi 26.09 3.00e-04 40.40
IUUC-Eca-033205 Equus caballus 24.48 4.00e-04 40.40
IUUC-Eeu-034784 Erinaceus europaeus 37.68 7.00e-03 35.80
IUUC-Fca-035797 Felis catus 35.21 6.00e-04 39.70
IUUC-Gmo-038855 Gadus morhua 35.48 7.00e-03 35.80
IUUC-Gga-040326 Gallus gallus 39.06 1.00e-04 42.00
IUUC-Gac-042240 Gasterosteus aculeatus 38.10 2.00e-03 37.70
IUUC-Ggo-045050 Gorilla gorilla 24.48 2.00e-03 38.10
IUUC-Hsa-046650 Homo sapiens 35.29 3.00e-03 37.40
IUUC-Itr-047965 Ictidomys tridecemlineatus 38.81 1.00e-03 37.00
IUUC-Loc-051884 Lepisosteus oculatus 38.71 1.00e-03 38.50
IUUC-Lma-053267 Leptosphaeria maculans 27.21 3.00e-38 153.00
IUUC-Laf-053843 Loxodonta africana 37.68 3.00e-03 37.40
IUUC-Mcc-055570 Macaca mulatta 35.29 3.00e-03 37.40
IUUC-Meu-056006 Macropus eugenii 30.91 6.30e-01 28.90
IUUC-Mtr-057915 Medicago truncatula 61.95 0.00e+00 1218.00
IUUC-Mga-059648 Meleagris gallopavo 39.06 2.00e-04 41.20
IUUC-Mmr-060757 Microcebus murinus 23.80 1.00e-03 38.90
IUUC-Mmu-064337 Mus musculus 37.68 2.00e-03 37.40
IUUC-Mac-064479 Musa acuminata 59.82 0.00e+00 965.00
IUUC-Mpu-066483 Mustela putorius furo 37.68 3.00e-03 37.40
IUUC-Mlu-068204 Myotis lucifugus 24.56 2.00e-05 44.70
IUUC-Ncr-068735 Neurospora crassa 27.56 7.00e-59 222.00
IUUC-Nle-070053 Nomascus leucogenys 24.19 2.00e-03 38.10
IUUC-Opr-070588 Ochotona princeps 37.68 2.00e-03 37.70
IUUC-Ocu-074465 Oryctolagus cuniculus 24.19 7.00e-04 39.30
IUUC-Obr-076710 Oryza brachyantha 62.43 0.00e+00 1163.00
IUUC-Oin-079176 Oryza indica 28.69 9.00e-37 147.00
IUUC-Oga-089088 Otolemur garnettii 23.70 2.00e-03 37.70
IUUC-Oar-089870 Ovis aries 23.89 7.00e-04 39.30
IUUC-Ptr-090957 Pan troglodytes 24.48 2.00e-03 37.70
IUUC-Pan-092632 Papio anubis 24.48 2.00e-03 38.10
IUUC-Psi-093035 Pelodiscus sinensis 37.68 1.00e-03 38.50
IUUC-Pno-094870 Phaeosphaeria nodorum 26.17 4.00e-47 182.00
IUUC-Ppa-095660 Physcomitrella patens 49.21 0.00e+00 919.00
IUUC-Pfo-096902 Poecilia formosa 25.32 1.30e-02 35.00
IUUC-Pab-098206 Pongo abelii 24.19 1.00e-03 38.10
IUUC-Pop-098801 Populus trichocarpa 61.20 0.00e+00 1070.00
IUUC-Pca-100238 Procavia capensis 37.68 3.00e-03 37.40
IUUC-Ppe-101748 Prunus persica 60.40 0.00e+00 1273.00
IUUC-Pva-103182 Pteropus vampyrus 37.68 6.00e-04 39.70
IUUC-Pte-104033 Pyrenophora teres 27.00 2.00e-49 190.00
IUUC-Pyt-104599 Pyrenophora triticirepentis 26.92 9.00e-48 184.00
IUUC-Rno-105141 Rattus norvegicus 37.88 2.00e-03 38.10
IUUC-Sce-106341 Saccharomyces cerevisiae 23.78 2.00e-09 57.00
IUUC-Sja-107882 Schizosaccharomyces japonicus 31.13 1.00e-06 48.10
IUUC-Spo-108147 Schizosaccharomyces pombe 32.77 7.00e-08 52.40
IUUC-Sly-111170 Solanum lycopersicum 68.61 0.00e+00 831.00
IUUC-Sre-115025 Sporisorium reilianum 31.25 2.00e-06 48.10
IUUC-Ssc-116188 Sus scrofa 24.48 2.00e-04 40.40
IUUC-Tni-120734 Tetraodon nigroviridis 32.14 3.00e-03 36.60
IUUC-Tca-121338 Theobroma cacao 62.37 0.00e+00 1346.00
IUUC-Tre-122089 Trichoderma reesei 33.33 9.00e-05 41.60
IUUC-Tme-127009 Tuber melanosporum 27.86 5.00e-20 92.80
IUUC-Tbe-127431 Tupaia belangeri 24.33 5.00e-03 36.60
IUUC-Ttr-128744 Tursiops truncatus 39.13 8.00e-04 39.30
IUUC-Uma-129536 Ustilago maydis 33.75 2.00e-07 51.20
IUUC-Vvi-131025 Vitis vinifera 58.42 0.00e+00 1169.00
IUUC-Xtr-132902 Xenopus tropicalis 36.36 9.00e-03 35.40
IUUC-Xma-133978 Xiphophorus maculatus 24.69 6.10e-02 32.30
Created Date 25-Jun-2017

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