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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Ath-007602
UUCD1 version UUC-ArT-01279
Ensembl Protein ID AT4G29730.1
UniProt Accession Q9SU78; Q6NQ53; MSI5_ARATH
Genbank Protein ID CAB45333.1; CAB79731.1; AEE85666.1; AAQ89632.1; BAD44188.1
Protein Name WD-40 repeat-containing protein MSI5
Genbank Nucleotide ID AL079344; AL161575; CP002687; BT010610; AK176425
Gene Name MSI5; At4g29730; T16L4.240
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT4G29730 AT4G29730.1 AT4G29730.1
AT4G29730 AT4G29730.2 AT4G29730.2
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
iRefIndexMentha
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 8.80e-27 92.9 316 346
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 2    Htdsvtclaf..sd.tllvsGsdDgtikvWD 29
           H ++ +c+++  +d +l+++Gs D+t++v+D
   Q: 316  HDADLHCVDWnpHDnNLILTGSADNTVRVFD 346
           9999*******9667**************** PP
   
Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description


     Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA.
 Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA.
Protein Sequence
(Fasta)
MESEAAATVQ ATRPRRAPRT PVTAILTDKR RRKPKSNNES QLPFLLQQSQ KATVDDTYSQ 60
WKTLLPILYD SFVNHTLVWP SLSCRWGPQL EQAGSKTQRL YLSEQTNGSV PNTLVIANCE 120
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Protein Fasta Sequence


>IUUC-Ath-007602|E3,WD_repeat|Arabidopsis thaliana
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Nucleotide Sequence
(Fasta)
GTTTACTCCA CGTGGCATAA ATAATAATAT TATAAAAAAA ACAAAGGAGA GTAGAGAGAA 60
AACGAGAGAA AAGAAGGAAA TGGAAAGCGA AGCAGCAGCG ACTGTTCAAG CCACCAGGCC 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Ath-007602|E3,WD_repeat|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0007--Acetylation
KW-0156--Chromatin regulator
KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0678--Repressor
KW-0804--Transcription
KW-0805--Transcription regulation
KW-0853--WD repeat
Interpro

IPR022052--Histone-bd_RBBP4_N
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF12265--CAF1C_H4-bd
PF00400--WD40
SMART

SM00320--WD40
Gene Ontology

GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:0005634--C:nucleus
GO:0016569--P:covalent chromatin modification
GO:0010629--P:negative regulation of gene expression
GO:0006355--P:regulation of transcription, DNA-templated
GO:0006351--P:transcription, DNA-templated
KEGG ath:AT4G29730
Orthology
iUUCD ID Species Identity E-value Score
Created Date 25-Jun-2017

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