iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Zma-135630

Ensembl Protein ID

Zm00001d035844_T010

UniProt Accession

B4FAN8; B4FAN8_MAIZE

Genbank Protein ID

ACF79181.1; ACR35367.1; AIB04959.1; AQK79756.1; AQK79769.1; AQK79770.1; AQK79772.1

Protein Name

LIM transcription factor; Ubiquitin receptor1

Genbank Nucleotide ID

BT034176; BT085014; KJ727468; CM000782; CM000782; CM000782; CM000782

Gene Name

LIM3; ZEAMMB73_Zm00001d035844

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d035844	Zm00001d035844_T002	Zm00001d035844_T002
Zm00001d035844	Zm00001d035844_T003	Zm00001d035844_T003
Zm00001d035844	Zm00001d035844_T010	Zm00001d035844_T010
Zm00001d035844	Zm00001d035844_T018	Zm00001d035844_T018
Zm00001d035844	Zm00001d035844_T020	Zm00001d035844_T020

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/Alpha-Helix/UIM	9.00e-07	30.2	77	93
UBD/Alpha-Helix/UIM	7.4e-05	14.5	49	65

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UIM

   S: 1    dEdeeLqlAlalSlqEe 17
           +Ede+L++A+++Sl++e
   Q: 77   EEDEQLARAIQESLNVE 93
           7*************997 PP

UBD/Alpha-Helix/UIM

   S: 4    eeLqlAlalSlqEeees 20
           e++ +A+alSl+Eee++
   Q: 49   EDIDRAIALSLSEEEQR 65
           899************86 PP

Organism

Zea mays

Protein Sequence
(Fasta)

MGWLTKFFRG STHNISEEQY HSRPAEDTAW NEPSSSPVVT DILSEFNNED IDRAIALSLS 60
EEEQRKEKAI DKDMHLEEDE QLARAIQESL NVESPPRRNG SANGGTMYHP PRETGNAYQP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTGGGCACCT GACGCCGCGA CCCCGGCCCC GAGCTGGCTT TGCCGGCCAA TCGGCTCGCC 60
CGCGCCGACC ACCGCGCCTC TTCCCCTCGC CGAGATCGCC TGAAAAGGCA AGCGAGGCCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0675--Receptor
KW-1185--Reference proteome

Interpro

IPR022087--DA1-like
IPR003903--UIM_dom
IPR001781--Znf_LIM

PROSITE

PS00478--LIM_DOMAIN_1
PS50023--LIM_DOMAIN_2
PS50330--UIM

Pfam

PF12315--DA1-like
PF00412--LIM
PF02809--UIM

SMART

SM00132--LIM
SM00726--UIM

Gene Ontology

GO:0008270--F:zinc ion binding
GO:0046621--P:negative regulation of organ growth
GO:0048482--P:plant ovule morphogenesis
GO:0048317--P:seed morphogenesis

KEGG

zma:100191921

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000888	Aegilops tauschii	86.68	0.00e+00	771.00
IUUC-Aml-001609	Ailuropoda melanoleuca	28.33	5.00e-03	34.30
IUUC-Atr-002465	Amborella trichopoda	72.46	0.00e+00	709.00
IUUC-Aca-004462	Anolis carolinensis	26.23	1.60e-02	32.70
IUUC-Aly-005589	Arabidopsis lyrata	69.07	0.00e+00	629.00
IUUC-Ath-007530	Arabidopsis thaliana	71.95	4.00e-177	613.00
IUUC-Ame-011762	Astyanax mexicanus	22.22	6.00e-04	39.70
IUUC-Bgr-012037	Blumeria graminis	27.87	1.10e-01	30.00
IUUC-Bta-012469	Bos taurus	26.67	4.80e-02	31.20
IUUC-Bdi-014217	Brachypodium distachyon	84.99	0.00e+00	854.00
IUUC-Bol-015361	Brassica oleracea	70.45	8.00e-176	609.00
IUUC-Bra-016788	Brassica rapa	51.53	2.00e-97	348.00
IUUC-Cel-018413	Caenorhabditis elegans	28.12	1.70e-02	33.10
IUUC-Cfa-020384	Canis familiaris	26.67	1.80e-02	32.30
IUUC-Cpo-021667	Cavia porcellus	37.66	4.00e-07	49.70
IUUC-Csa-023039	Chlorocebus sabaeus	26.67	2.00e-02	32.30
IUUC-Cin-025236	Ciona intestinalis	30.19	4.00e-04	37.70
IUUC-Csv-026002	Ciona savignyi	28.30	3.00e-03	35.00
IUUC-Cgl-026515	Colletotrichum gloeosporioides	34.83	4.50e-01	28.90
IUUC-Dre-027455	Danio rerio	20.83	6.00e-04	39.30
IUUC-Dse-031181	Dothistroma septosporum	32.39	2.00e-04	40.40
IUUC-Dme-031605	Drosophila melanogaster	25.74	8.00e-06	46.20
IUUC-Fca-035699	Felis catus	28.33	4.00e-03	34.70
IUUC-Fal-037626	Ficedula albicollis	37.66	6.00e-07	49.30
IUUC-Gmo-038981	Gadus morhua	25.00	7.00e-03	33.50
IUUC-Gga-040724	Gallus gallus	21.38	4.00e-04	40.00
IUUC-Gac-041929	Gasterosteus aculeatus	25.00	1.70e-02	32.30
IUUC-Gma-043003	Glycine max	57.77	0.00e+00	631.00
IUUC-Hsa-046825	Homo sapiens	26.67	2.20e-02	32.30
IUUC-Hvu-047551	Hordeum vulgare	64.59	0.00e+00	633.00
IUUC-Lpe-050858	Leersia perrieri	81.94	0.00e+00	832.00
IUUC-Loc-052468	Lepisosteus oculatus	21.05	6.00e-04	39.30
IUUC-Laf-053578	Loxodonta africana	26.23	8.00e-03	33.50
IUUC-Mcc-055650	Macaca mulatta	26.67	2.30e-02	32.00
IUUC-Mpo-057455	Magnaporthe poae	31.11	2.90e-01	29.30
IUUC-Mtr-058103	Medicago truncatula	61.87	0.00e+00	646.00
IUUC-Mla-059141	Melampsora laricipopulina	27.50	1.00e-06	47.80
IUUC-Mmr-060595	Microcebus murinus	37.66	3.00e-07	49.70
IUUC-Mdo-061979	Monodelphis domestica	26.67	2.30e-02	32.00
IUUC-Mmu-063302	Mus musculus	26.67	2.90e-02	31.60
IUUC-Mac-065516	Musa acuminata	56.22	5.00e-55	206.00
IUUC-Mpu-066114	Mustela putorius furo	26.39	4.00e-03	34.70
IUUC-Mlu-068217	Myotis lucifugus	26.67	2.50e-02	32.00
IUUC-Opr-070892	Ochotona princeps	26.67	2.70e-02	32.00
IUUC-Ont-071811	Oreochromis niloticus	25.00	1.30e-02	33.10
IUUC-Ocu-073804	Oryctolagus cuniculus	26.67	2.30e-02	32.00
IUUC-Oba-075285	Oryza barthii	86.84	0.00e+00	849.00
IUUC-Obr-076433	Oryza brachyantha	86.30	0.00e+00	863.00
IUUC-Ogl-077044	Oryza glaberrima	86.84	0.00e+00	849.00
IUUC-Ogu-078868	Oryza glumaepatula	86.84	0.00e+00	849.00
IUUC-Oin-079737	Oryza indica	87.42	0.00e+00	786.00
IUUC-Olo-080337	Oryza longistaminata	81.22	0.00e+00	834.00
IUUC-Oni-082197	Oryza nivara	86.84	0.00e+00	849.00
IUUC-Opu-083815	Oryza punctata	81.37	0.00e+00	830.00
IUUC-Oru-085246	Oryza rufipogon	86.84	0.00e+00	849.00
IUUC-Osa-086082	Oryza sativa	86.84	0.00e+00	849.00
IUUC-Ola-087406	Oryzias latipes	38.89	2.00e-08	54.30
IUUC-Olu-087728	Ostreococcus lucimarinus	33.69	3.00e-52	199.00
IUUC-Oga-088707	Otolemur garnettii	25.00	2.30e-02	32.00
IUUC-Oar-089771	Ovis aries	26.67	2.00e-02	32.30
IUUC-Ptr-091237	Pan troglodytes	26.67	2.20e-02	32.30
IUUC-Pan-092656	Papio anubis	26.67	2.30e-02	32.00
IUUC-Pno-094933	Phaeosphaeria nodorum	30.99	2.50e-02	33.90
IUUC-Ppa-096027	Physcomitrella patens	51.51	1.00e-131	462.00
IUUC-Pfo-097294	Poecilia formosa	38.96	6.00e-09	55.50
IUUC-Pab-098372	Pongo abelii	20.12	2.00e-03	38.10
IUUC-Pop-100076	Populus trichocarpa	66.47	0.00e+00	678.00
IUUC-Pca-100691	Procavia capensis	28.33	2.00e-03	35.80
IUUC-Pva-102270	Pteropus vampyrus	26.67	2.30e-02	32.00
IUUC-Pte-104256	Pyrenophora teres	29.67	5.00e-03	36.20
IUUC-Pyt-104720	Pyrenophora triticirepentis	28.57	1.30e-02	33.50
IUUC-Rno-105362	Rattus norvegicus	26.67	2.70e-02	32.00
IUUC-Smo-108841	Selaginella moellendorffii	64.66	1.00e-135	475.00
IUUC-Sit-110147	Setaria italica	92.22	0.00e+00	932.00
IUUC-Sly-111689	Solanum lycopersicum	69.80	0.00e+00	691.00
IUUC-Stu-112186	Solanum tuberosum	69.41	0.00e+00	690.00
IUUC-Sar-113038	Sorex araneus	35.71	4.30e-02	32.70
IUUC-Sbi-114752	Sorghum bicolor	91.94	0.00e+00	915.00
IUUC-Sre-115199	Sporisorium reilianum	33.78	4.00e-08	53.50
IUUC-Ssc-116398	Sus scrofa	20.50	2.00e-03	37.70
IUUC-Tgu-116824	Taeniopygia guttata	37.66	2.00e-06	47.00
IUUC-Tru-118213	Takifugu rubripes	25.00	2.20e-02	32.30
IUUC-Tni-120393	Tetraodon nigroviridis	27.12	1.50e-02	32.30
IUUC-Tca-121863	Theobroma cacao	60.65	3.00e-180	624.00
IUUC-Tae-125101	Triticum aestivum	85.88	0.00e+00	853.00
IUUC-Tur-126006	Triticum urartu	83.10	0.00e+00	776.00
IUUC-Tbe-127395	Tupaia belangeri	33.66	4.00e-07	48.90
IUUC-Ttr-128508	Tursiops truncatus	24.19	7.70e-01	28.90
IUUC-Uma-129653	Ustilago maydis	40.74	9.00e-08	52.40
IUUC-Vpa-130784	Vicugna pacos	37.66	6.00e-07	48.90
IUUC-Vvi-131286	Vitis vinifera	69.61	0.00e+00	699.00
IUUC-Xtr-131827	Xenopus tropicalis	24.59	1.20e-02	33.10
IUUC-Xma-134125	Xiphophorus maculatus	38.96	5.00e-09	55.80

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence