iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Aly-006449

Ensembl Protein ID

fgenesh1_pg.C_scaffold_6000133

UniProt Accession

D7M7T0; D7M7T0_ARALL

Genbank Protein ID

EFH47231.1

Protein Name

WD-40 repeat family protein

Genbank Nucleotide ID

GL348718

Gene Name

ARALYDRAFT_349540

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
fgenesh1_pg.C_scaffold_6000133	fgenesh1_pg.C_scaffold_6000133	fgenesh1_pg.C_scaffold_6000133

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.40e-29	100.3	517	554
UBD/Beta-Prp	4.80e-41	141.6	504	736

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sdtllvsGsdDgtikvWDlrtgvllk 37
           gH d+v +l++  + ll+s+s D+t+++WD+ t+ +lk
   Q: 517  GHLDDVLDLSWsRSQLLLSSSMDKTVRLWDIETQSCLK 554
           8**********8449*******************9986 PP

UBD/Beta-Prp

   S: 36   vwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfsp.sgdklvsGs 113
           v+++++ k + s+ gh + v ++++s+++ +l+++s D+t+++wd++t +c+  +  h+d+v++++f+p + d+++sGs
   Q: 504  VFSLSD-KPICSFTGHLDDVLDLSWSRSQ-LLLSSSMDKTVRLWDIETQSCLKLFA-HNDYVTCVQFNPlDEDYFISGS 579
           556666.5568999**************8.***********************999.************777******* PP
   S: 114  hdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtl.......tgghtdsvys 185
            d  ir+w+++++q++e   +  +++v+ v++ pdg+  + Gs ++ +rl++ +  kl +t        ++++ ++++ 
   Q: 580  LDAKIRIWNISNRQVVE--WNDLKEMVTAVCYTPDGQAAFVGSINGNCRLYSAEDCKLEQTNqidlqnkKKAQAKKITA 656
           ****************9..788889****************************99999999999999997889999999 PP
   S: 186  lsfdsng.kelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfs..pnderlvsgssDgsiriWdlrsgdllktlq 261
            +f++    e++  s d+++++ d   +e v++++g ++  +++ +s   + +++v++s+D ++++W  ++ ++   ++
   Q: 657  FQFSPINpSEVLVTSADSRIRILDG--TELVQKFRGFKNINSQMTASytVDAKHIVCASEDSQVYVW--KHEEPRLGIT 731
           9999966599*************98..556888888887777777666679****************..7888777777 PP
   S: 262  lhnss 266
           ++++ 
   Q: 732  GRKTV 736
           76644 PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MANQGGENGK LERKKTMTMN WAGLGEVEDD DDHFFDSSNR ISTVVPLDLA SSSDEEEGEF 60
DDCRISFSSN VSSSSRAAPT PDMSPDYDIW MSAPGSITER RRRLLNGMGL ESKKTMLGAI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCGAATC AAGGCGGCGA AAACGGGAAA TTGGAACGGA AGAAGACGAT GACGATGAAT 60
TGGGCGGGGT TAGGCGAGGT TGAAGACGAC GACGATCATT TTTTCGATAG CTCTAATCGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

KEGG

aly:ARALYDRAFT_349540

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ath-007008	Arabidopsis thaliana	96.03	0.00e+00	1469.00
IUUC-Bol-016392	Brassica oleracea	77.27	0.00e+00	1202.00
IUUC-Bra-017653	Brassica rapa	77.94	0.00e+00	1241.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence