iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Oni-082507

Ensembl Protein ID

ONIVA07G19860.2

UniProt Accession

A0A0E0I3C0; A0A0E0I3C0_ORYNI

Protein Name

Ribosome biogenesis protein WDR12 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ONIVA07G19860	ONIVA07G19860.1	ONIVA07G19860.1
ONIVA07G19860	ONIVA07G19860.2	ONIVA07G19860.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.60e-31	107.4	191	222

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDl 30
           gHt+sv ++a  ++ ++++sGs+D++ik+W++
   Q: 191  GHTSSVQSVAVdPStNMICSGSWDNSIKLWSV 222
           8***********666***************96 PP

Organism

Oryza nivara

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MDSGGASDPS RQVRVRFVTK LPAPLRAPPT SIAVPADLTR MGLSEIVNSL LLAASPDHQA 60
QPFDFLVDGE LVRLPLQEFL HAKGISVERV LELEYVKAVA PRKQEDPCPH DDWVSAVDGS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGACTCCG GCGGCGCCTC CGACCCCTCG CGCCAGGTGC GGGTGCGCTT CGTGACGAAG 60
CTCCCCGCGC CGCTGCGCGC GCCGCCCACC TCCATTGCCG TCCCCGCCGA CCTCACCCGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0009506--C:plasmodesma
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	82.18	0.00e+00	724.00
IUUC-Aml-001997	Ailuropoda melanoleuca	34.42	2.00e-51	196.00
IUUC-Atr-002544	Amborella trichopoda	60.96	4.00e-153	533.00
IUUC-Apl-003981	Anas platyrhynchos	32.62	8.00e-52	196.00
IUUC-Aca-004370	Anolis carolinensis	33.81	4.00e-61	228.00
IUUC-Aly-006455	Arabidopsis lyrata	60.00	8.00e-156	542.00
IUUC-Ath-006669	Arabidopsis thaliana	59.95	3.00e-152	530.00
IUUC-Ago-007864	Ashbya gossypii	30.17	5.00e-40	158.00
IUUC-Acl-008177	Aspergillus clavatus	28.72	9.00e-36	144.00
IUUC-Afl-008617	Aspergillus flavus	28.95	4.00e-32	132.00
IUUC-Afu-008752	Aspergillus fumigatus	28.81	4.00e-33	135.00
IUUC-Ani-009136	Aspergillus nidulans	28.79	5.00e-34	138.00
IUUC-Ang-009701	Aspergillus niger	27.87	8.00e-31	127.00
IUUC-Aor-009884	Aspergillus oryzae	28.95	2.00e-32	133.00
IUUC-Ate-010472	Aspergillus terreus	26.67	3.00e-12	65.50
IUUC-Ame-011432	Astyanax mexicanus	33.25	2.00e-61	229.00
IUUC-Bgr-012218	Blumeria graminis	27.61	3.00e-32	132.00
IUUC-Bta-012829	Bos taurus	33.25	1.00e-52	199.00
IUUC-Bci-013953	Botrytis cinerea	27.67	8.00e-34	137.00
IUUC-Bdi-014351	Brachypodium distachyon	82.26	0.00e+00	703.00
IUUC-Bol-016514	Brassica oleracea	60.14	9.00e-144	502.00
IUUC-Bra-016988	Brassica rapa	60.37	2.00e-144	504.00
IUUC-Cel-018569	Caenorhabditis elegans	24.31	4.00e-26	111.00
IUUC-Cja-019468	Callithrix jacchus	33.73	2.00e-50	192.00
IUUC-Cfa-020471	Canis familiaris	32.85	2.00e-50	192.00
IUUC-Cpo-022260	Cavia porcellus	34.69	3.00e-52	198.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	37.38	1.00e-61	229.00
IUUC-Csa-023989	Chlorocebus sabaeus	33.49	2.00e-50	192.00
IUUC-Cho-024426	Choloepus hoffmanni	32.29	6.00e-37	147.00
IUUC-Cin-025789	Ciona intestinalis	30.94	6.00e-49	187.00
IUUC-Cgl-026562	Colletotrichum gloeosporioides	29.67	7.00e-07	46.60
IUUC-Cne-027063	Cryptococcus neoformans	25.98	7.00e-25	107.00
IUUC-Dre-027907	Danio rerio	33.57	8.00e-62	230.00
IUUC-Dno-029225	Dasypus novemcinctus	33.73	4.00e-53	201.00
IUUC-Dor-031082	Dipodomys ordii	30.87	1.00e-20	93.20
IUUC-Dse-031308	Dothistroma septosporum	35.51	2.00e-50	192.00
IUUC-Dme-032189	Drosophila melanogaster	28.16	2.00e-39	156.00
IUUC-Ete-032247	Echinops telfairi	32.06	4.00e-46	178.00
IUUC-Eca-034285	Equus caballus	33.25	1.00e-51	196.00
IUUC-Eeu-035322	Erinaceus europaeus	29.10	3.00e-42	165.00
IUUC-Fca-036114	Felis catus	33.49	7.00e-52	197.00
IUUC-Fal-036891	Ficedula albicollis	32.23	6.00e-45	174.00
IUUC-Fox-037965	Fusarium oxysporum	24.74	5.00e-28	118.00
IUUC-Fso-038244	Fusarium solani	25.78	3.00e-31	129.00
IUUC-Gmo-039040	Gadus morhua	33.33	1.00e-62	233.00
IUUC-Ggr-040093	Gaeumannomyces graminis	22.98	1.00e-23	103.00
IUUC-Gga-040610	Gallus gallus	32.61	1.00e-56	213.00
IUUC-Gac-042117	Gasterosteus aculeatus	32.62	9.00e-60	223.00
IUUC-Gma-043967	Glycine max	60.96	7.00e-155	539.00
IUUC-Ggo-045179	Gorilla gorilla	33.25	7.00e-50	190.00
IUUC-Hsa-046114	Homo sapiens	33.49	3.00e-50	192.00
IUUC-Hvu-047331	Hordeum vulgare	80.40	0.00e+00	631.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	33.97	7.00e-53	200.00
IUUC-Kpa-049304	Komagataella pastoris	28.11	8.00e-40	157.00
IUUC-Lch-050655	Latimeria chalumnae	30.03	4.00e-38	151.00
IUUC-Lpe-051675	Leersia perrieri	92.18	0.00e+00	805.00
IUUC-Loc-052868	Lepisosteus oculatus	32.94	3.00e-61	228.00
IUUC-Lma-053258	Leptosphaeria maculans	31.64	3.00e-39	157.00
IUUC-Laf-053993	Loxodonta africana	33.73	6.00e-53	201.00
IUUC-Mcc-055128	Macaca mulatta	27.16	9.00e-29	120.00
IUUC-Meu-056501	Macropus eugenii	33.63	1.00e-44	172.00
IUUC-Mor-057114	Magnaporthe oryzae	28.98	4.00e-35	142.00
IUUC-Mpo-057463	Magnaporthe poae	39.81	1.00e-15	76.30
IUUC-Mtr-058367	Medicago truncatula	57.67	7.00e-145	506.00
IUUC-Mla-059107	Melampsora laricipopulina	25.21	1.00e-31	130.00
IUUC-Mga-059745	Meleagris gallopavo	33.50	3.00e-55	208.00
IUUC-Mvi-060362	Microbotryum violaceum	24.73	2.00e-28	119.00
IUUC-Mdo-062257	Monodelphis domestica	34.52	3.00e-58	218.00
IUUC-Mmu-063546	Mus musculus	32.61	2.00e-52	199.00
IUUC-Mac-065540	Musa acuminata	68.47	3.00e-172	597.00
IUUC-Mpu-066284	Mustela putorius furo	33.49	2.00e-52	199.00
IUUC-Mlu-067241	Myotis lucifugus	33.97	5.00e-53	201.00
IUUC-Nfi-068260	Neosartorya fischeri	28.76	2.00e-35	143.00
IUUC-Ncr-068719	Neurospora crassa	28.64	1.00e-29	124.00
IUUC-Nle-068981	Nomascus leucogenys	33.73	2.00e-49	189.00
IUUC-Opr-071218	Ochotona princeps	31.59	3.00e-48	185.00
IUUC-Ont-071646	Oreochromis niloticus	32.37	2.00e-54	206.00
IUUC-Oan-073453	Ornithorhynchus anatinus	32.46	1.00e-59	223.00
IUUC-Ocu-074008	Oryctolagus cuniculus	33.97	2.00e-53	202.00
IUUC-Oba-075712	Oryza barthii	88.21	0.00e+00	738.00
IUUC-Obr-076721	Oryza brachyantha	89.02	0.00e+00	785.00
IUUC-Ogl-077229	Oryza glaberrima	95.87	0.00e+00	840.00
IUUC-Ogu-078977	Oryza glumaepatula	88.68	0.00e+00	743.00
IUUC-Oin-079683	Oryza indica	95.87	0.00e+00	842.00
IUUC-Olo-080291	Oryza longistaminata	70.81	5.00e-138	483.00
IUUC-Ome-081834	Oryza meridionalis	95.55	0.00e+00	822.00
IUUC-Opu-083396	Oryza punctata	93.76	0.00e+00	818.00
IUUC-Oru-085220	Oryza rufipogon	99.54	0.00e+00	872.00
IUUC-Osa-085767	Oryza sativa	95.87	0.00e+00	842.00
IUUC-Ola-087420	Oryzias latipes	32.69	2.00e-62	232.00
IUUC-Olu-087740	Ostreococcus lucimarinus	32.86	3.00e-56	212.00
IUUC-Oga-088264	Otolemur garnettii	33.81	7.00e-50	190.00
IUUC-Oar-089335	Ovis aries	33.49	5.00e-53	201.00
IUUC-Ptr-091320	Pan troglodytes	33.49	3.00e-50	192.00
IUUC-Pan-092833	Papio anubis	33.73	1.00e-50	193.00
IUUC-Psi-093504	Pelodiscus sinensis	32.30	5.00e-53	201.00
IUUC-Pma-094189	Petromyzon marinus	34.36	3.00e-58	218.00
IUUC-Pno-094929	Phaeosphaeria nodorum	29.72	8.00e-37	147.00
IUUC-Ppa-095429	Physcomitrella patens	49.54	2.00e-117	415.00
IUUC-Pfo-096337	Poecilia formosa	34.05	2.00e-61	229.00
IUUC-Pab-097571	Pongo abelii	33.49	3.00e-50	191.00
IUUC-Pop-099977	Populus trichocarpa	62.62	9.00e-156	542.00
IUUC-Pca-100394	Procavia capensis	32.42	4.00e-42	165.00
IUUC-Ppe-101848	Prunus persica	59.00	2.00e-154	538.00
IUUC-Pva-102921	Pteropus vampyrus	31.08	2.00e-19	90.10
IUUC-Pgr-103637	Puccinia graminis	26.01	7.00e-31	127.00
IUUC-Ptt-103781	Puccinia triticina	26.45	7.00e-30	124.00
IUUC-Pte-104135	Pyrenophora teres	29.36	4.00e-36	146.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	29.26	5.00e-38	151.00
IUUC-Rno-105114	Rattus norvegicus	32.85	7.00e-52	197.00
IUUC-Sce-106401	Saccharomyces cerevisiae	29.26	4.00e-38	151.00
IUUC-Sha-107122	Sarcophilus harrisii	34.20	2.00e-57	215.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	28.76	2.00e-35	143.00
IUUC-Spo-108134	Schizosaccharomyces pombe	27.77	3.00e-34	139.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	27.80	2.00e-37	149.00
IUUC-Smo-108720	Selaginella moellendorffii	47.90	6.00e-112	396.00
IUUC-Sit-110354	Setaria italica	83.14	0.00e+00	729.00
IUUC-Sly-111023	Solanum lycopersicum	54.85	9.00e-140	489.00
IUUC-Stu-112778	Solanum tuberosum	61.33	1.00e-150	525.00
IUUC-Sar-113596	Sorex araneus	31.71	1.00e-42	166.00
IUUC-Sbi-114193	Sorghum bicolor	81.02	0.00e+00	677.00
IUUC-Sre-115002	Sporisorium reilianum	22.86	5.00e-15	75.50
IUUC-Ssc-116066	Sus scrofa	33.49	2.00e-52	199.00
IUUC-Tgu-117048	Taeniopygia guttata	33.16	5.00e-52	197.00
IUUC-Tni-119820	Tetraodon nigroviridis	34.05	1.00e-57	216.00
IUUC-Tca-121605	Theobroma cacao	61.78	7.00e-159	553.00
IUUC-Tre-121947	Trichoderma reesei	25.78	2.00e-31	129.00
IUUC-Tvi-122481	Trichoderma virens	25.77	3.00e-31	129.00
IUUC-Tae-123504	Triticum aestivum	82.41	0.00e+00	727.00
IUUC-Tur-126586	Triticum urartu	82.16	0.00e+00	667.00
IUUC-Tme-126900	Tuber melanosporum	30.02	1.00e-46	180.00
IUUC-Tbe-127736	Tupaia belangeri	28.48	9.00e-30	123.00
IUUC-Ttr-129041	Tursiops truncatus	30.29	7.00e-40	157.00
IUUC-Uma-129628	Ustilago maydis	27.67	7.00e-10	58.20
IUUC-Vpa-130260	Vicugna pacos	33.49	2.00e-52	199.00
IUUC-Vvi-131009	Vitis vinifera	64.91	4.00e-168	583.00
IUUC-Xtr-132083	Xenopus tropicalis	34.53	4.00e-57	214.00
IUUC-Xma-133094	Xiphophorus maculatus	32.69	5.00e-60	224.00
IUUC-Yli-134531	Yarrowia lipolytica	27.24	1.00e-26	114.00
IUUC-Zma-135509	Zea mays	81.25	0.00e+00	710.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence