iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pyt-104658

Ensembl Protein ID

EDU45302

UniProt Accession

B2VZD9; B2VZD9_PYRTR

Genbank Protein ID

EDU45302.1

Protein Name

Small nucleolar ribonucleoprotein complex subunit

Genbank Nucleotide ID

DS231616

Gene Name

PTRG_02779

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PTRG_02779	EDU45302	EDU45302

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.50e-52	170.7	547	589
UBD/Beta-Prp	1.50e-84	283.0	339	560

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..........sd.tllvsGsdDgtikvWDlrt 32
           gH+ +v++++f           + +l+++Gs+D+t+kvW+l +
   Q: 547  GHKRGVWSVKFapkdsqapnsGNkGLIATGSGDKTVKVWSLAD 589
           8*****************98633699**************876 PP

UBD/Beta-Prp

   S: 5    lkghhksvitcvkfspdksllatgsrdgtikvwdvttgkl............lrslsgheaevtavkfspdgkilvtgseDrtikvwdls....tgkcvht 89
           ++g+h++vi    + +dkslla    ++ i++  + +               +  l+ghe+ v +++ + +g +lvtg++D+t+++w l+    +++c+ +
   Q: 339  VSGTHDEVIDIAYVGRDKSLLALNTNSEDIRIITLNESEGddategryfgadVGLLKGHEDIVICLDVDWSGHWLVTGAKDNTARLWRLDpkneSYTCTAV 439
           5789999**955559*******999999999998888666889********************************************555557799***** PP
   S: 90   lkghedsvls..................lsfspsgdklvsGshdrtirvwdletgqclee....tlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlkt 168
           l+gh +s+ +                  ls  p   ++v+Gs+drt++ wd+ ++ + +     t + hd+ +n + ++p+g l++s+s Drtv++++++ 
   Q: 440  LTGHAESLGAialphaapqessaaftdpLSHPP--AYIVTGSQDRTVKRWDTTKEMKGKLrakyTRKAHDKDINAIDIDPSGTLFASASQDRTVKIYSSAE 538
           *********************987766555555..***************98887766558899************************************* PP
   S: 169  gkllrtltgghtdsvyslsfdsn 191
           g+ +  l+g h++ v s++f ++
   Q: 539  GEAIGVLRG-HKRGVWSVKFAPK 560
           ********9.*********9875 PP

Organism

Pyrenophora triticirepentis

Protein Sequence
(Fasta)

MSAQRSAVKT TYEVDRTIQP IYSGGSLALS QDGRILAASL VTPSASHLIV CSRSLSMRFF 60
ALNASDTEDD TIELELLRTL KPHTSPVVTL ATDRTGTLVG TGGADGVVKV WDIRGGYTTH 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCGGCGC AAAGAAGTGC AGTAAAGACT ACATACGAGG TCGATCGTAC CATCCAACCT 60
ATTTACTCGG GTGGAAGTTT AGCATTGAGC CAAGATGGGC GCATTCTGGC CGCGAGCTTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0687--Ribonucleoprotein
KW-0543--Viral nucleoprotein
KW-0946--Virion
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR013934--SSU_processome_Utp13
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08625--Utp13
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0034388--C:Pwp2p-containing subcomplex of 90S preribosome
GO:0032040--C:small-subunit processome
GO:0019013--C:viral nucleocapsid
GO:0030515--F:snoRNA binding
GO:0000480--P:endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000447--P:endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000472--P:endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000765	Aegilops tauschii	30.20	3.00e-97	348.00
IUUC-Aml-002376	Ailuropoda melanoleuca	28.46	4.00e-96	343.00
IUUC-Atr-002486	Amborella trichopoda	29.90	2.00e-107	381.00
IUUC-Apl-003519	Anas platyrhynchos	29.96	4.00e-91	327.00
IUUC-Aca-004363	Anolis carolinensis	28.75	1.00e-42	165.00
IUUC-Aly-006152	Arabidopsis lyrata	29.06	1.00e-97	349.00
IUUC-Ath-006966	Arabidopsis thaliana	29.28	1.00e-97	349.00
IUUC-Ago-007746	Ashbya gossypii	31.47	5.00e-119	420.00
IUUC-Acl-008009	Aspergillus clavatus	51.22	0.00e+00	905.00
IUUC-Afl-008681	Aspergillus flavus	49.95	0.00e+00	828.00
IUUC-Afu-008798	Aspergillus fumigatus	52.54	0.00e+00	896.00
IUUC-Ani-009278	Aspergillus nidulans	50.42	0.00e+00	911.00
IUUC-Ang-009640	Aspergillus niger	51.34	0.00e+00	886.00
IUUC-Aor-010160	Aspergillus oryzae	49.84	0.00e+00	829.00
IUUC-Ate-010320	Aspergillus terreus	50.38	0.00e+00	889.00
IUUC-Bgr-012054	Blumeria graminis	49.78	0.00e+00	874.00
IUUC-Bta-012611	Bos taurus	28.91	9.00e-94	336.00
IUUC-Bci-013797	Botrytis cinerea	56.31	0.00e+00	973.00
IUUC-Bdi-014384	Brachypodium distachyon	30.75	2.00e-109	388.00
IUUC-Bol-016483	Brassica oleracea	29.97	2.00e-96	345.00
IUUC-Bra-017328	Brassica rapa	29.30	3.00e-93	334.00
IUUC-Cel-018664	Caenorhabditis elegans	26.48	7.00e-77	280.00
IUUC-Cja-019092	Callithrix jacchus	28.60	1.00e-98	352.00
IUUC-Cfa-021040	Canis familiaris	28.06	2.00e-96	344.00
IUUC-Cpo-022529	Cavia porcellus	29.66	9.00e-92	329.00
IUUC-Cre-022986	Chlamydomonas reinhardtii	46.71	5.00e-35	137.00
IUUC-Csa-024205	Chlorocebus sabaeus	28.97	2.00e-100	358.00
IUUC-Cin-025560	Ciona intestinalis	26.56	2.00e-94	338.00
IUUC-Cgl-026481	Colletotrichum gloeosporioides	52.86	0.00e+00	928.00
IUUC-Cne-027082	Cryptococcus neoformans	31.31	8.00e-130	456.00
IUUC-Cme-027159	Cyanidioschyzon merolae	26.07	1.00e-29	123.00
IUUC-Dre-028138	Danio rerio	27.92	7.00e-90	323.00
IUUC-Dno-029914	Dasypus novemcinctus	26.98	4.00e-52	197.00
IUUC-Dor-030685	Dipodomys ordii	30.87	1.00e-65	242.00
IUUC-Dse-031429	Dothistroma septosporum	51.38	0.00e+00	905.00
IUUC-Dme-031995	Drosophila melanogaster	24.88	1.00e-61	229.00
IUUC-Ete-033086	Echinops telfairi	32.10	2.00e-64	238.00
IUUC-Eca-034354	Equus caballus	29.23	2.00e-92	332.00
IUUC-Eeu-034832	Erinaceus europaeus	30.65	7.00e-61	227.00
IUUC-Fca-036136	Felis catus	27.65	2.00e-82	298.00
IUUC-Fal-036859	Ficedula albicollis	29.14	1.00e-102	365.00
IUUC-Fox-037863	Fusarium oxysporum	52.01	0.00e+00	853.00
IUUC-Fso-038389	Fusarium solani	52.34	0.00e+00	917.00
IUUC-Gmo-038711	Gadus morhua	27.24	5.00e-80	290.00
IUUC-Ggr-039820	Gaeumannomyces graminis	52.29	0.00e+00	877.00
IUUC-Gga-040263	Gallus gallus	28.96	1.00e-100	359.00
IUUC-Gac-041291	Gasterosteus aculeatus	29.03	5.00e-101	360.00
IUUC-Gma-044026	Glycine max	31.58	6.00e-115	406.00
IUUC-Ggo-044693	Gorilla gorilla	29.25	3.00e-100	357.00
IUUC-Hsa-046048	Homo sapiens	29.25	2.00e-100	358.00
IUUC-Hvu-047608	Hordeum vulgare	30.65	3.00e-107	381.00
IUUC-Itr-048391	Ictidomys tridecemlineatus	29.58	5.00e-105	373.00
IUUC-Kpa-049209	Komagataella pastoris	33.49	7.00e-132	462.00
IUUC-Lch-050085	Latimeria chalumnae	29.09	3.00e-93	334.00
IUUC-Lpe-050945	Leersia perrieri	30.69	8.00e-105	373.00
IUUC-Loc-052679	Lepisosteus oculatus	29.20	3.00e-109	388.00
IUUC-Laf-053685	Loxodonta africana	28.24	4.00e-88	317.00
IUUC-Mcc-055861	Macaca mulatta	29.54	3.00e-98	351.00
IUUC-Meu-056820	Macropus eugenii	27.21	4.00e-40	158.00
IUUC-Mor-057234	Magnaporthe oryzae	48.98	0.00e+00	842.00
IUUC-Mpo-057456	Magnaporthe poae	50.73	0.00e+00	684.00
IUUC-Mtr-058122	Medicago truncatula	31.69	1.00e-114	405.00
IUUC-Mla-058980	Melampsora laricipopulina	30.08	2.00e-103	369.00
IUUC-Mga-060080	Meleagris gallopavo	29.08	1.00e-99	355.00
IUUC-Mvi-060338	Microbotryum violaceum	34.21	6.00e-145	506.00
IUUC-Mmr-060762	Microcebus murinus	29.21	1.00e-95	342.00
IUUC-Mdo-061975	Monodelphis domestica	29.43	7.00e-91	326.00
IUUC-Mmu-064038	Mus musculus	30.22	1.00e-95	342.00
IUUC-Mac-065189	Musa acuminata	29.70	5.00e-108	384.00
IUUC-Mpu-066526	Mustela putorius furo	29.02	4.00e-94	337.00
IUUC-Mlu-067716	Myotis lucifugus	29.08	2.00e-103	368.00
IUUC-Nfi-068474	Neosartorya fischeri	52.35	0.00e+00	892.00
IUUC-Ncr-068826	Neurospora crassa	49.07	0.00e+00	863.00
IUUC-Nle-069832	Nomascus leucogenys	28.86	1.00e-100	359.00
IUUC-Opr-071183	Ochotona princeps	29.49	5.00e-94	337.00
IUUC-Ont-072371	Oreochromis niloticus	29.96	2.00e-102	365.00
IUUC-Oan-073491	Ornithorhynchus anatinus	28.40	2.00e-79	288.00
IUUC-Oba-075963	Oryza barthii	31.85	3.00e-107	381.00
IUUC-Obr-076173	Oryza brachyantha	32.09	3.00e-106	378.00
IUUC-Ogl-077692	Oryza glaberrima	31.81	2.00e-106	378.00
IUUC-Ogu-078965	Oryza glumaepatula	31.73	3.00e-107	381.00
IUUC-Oin-079708	Oryza indica	31.73	1.00e-106	379.00
IUUC-Olo-080679	Oryza longistaminata	31.98	2.00e-107	382.00
IUUC-Oni-082960	Oryza nivara	31.60	3.00e-106	378.00
IUUC-Opu-083282	Oryza punctata	29.81	4.00e-103	367.00
IUUC-Oru-085224	Oryza rufipogon	31.85	3.00e-107	381.00
IUUC-Osa-085320	Oryza sativa	31.85	3.00e-107	381.00
IUUC-Olu-087814	Ostreococcus lucimarinus	27.73	3.00e-76	278.00
IUUC-Oga-088458	Otolemur garnettii	29.10	2.00e-101	361.00
IUUC-Oar-090032	Ovis aries	27.55	7.00e-70	256.00
IUUC-Ptr-090749	Pan troglodytes	29.58	3.00e-100	357.00
IUUC-Pan-091691	Papio anubis	27.78	1.00e-90	325.00
IUUC-Psi-093200	Pelodiscus sinensis	28.44	1.00e-99	355.00
IUUC-Pma-094165	Petromyzon marinus	27.99	5.00e-74	270.00
IUUC-Pno-095048	Phaeosphaeria nodorum	80.97	0.00e+00	1202.00
IUUC-Ppa-095336	Physcomitrella patens	29.10	1.00e-98	352.00
IUUC-Pfo-096132	Poecilia formosa	29.01	3.00e-96	345.00
IUUC-Pab-097855	Pongo abelii	29.65	6.00e-100	357.00
IUUC-Pop-099434	Populus trichocarpa	28.26	2.00e-96	345.00
IUUC-Pca-100232	Procavia capensis	36.12	6.00e-37	147.00
IUUC-Ppe-101665	Prunus persica	30.19	1.00e-102	365.00
IUUC-Pva-102178	Pteropus vampyrus	28.94	3.00e-98	351.00
IUUC-Pgr-103288	Puccinia graminis	28.34	4.00e-102	364.00
IUUC-Ptt-103808	Puccinia triticina	31.41	1.00e-98	352.00
IUUC-Pte-104205	Pyrenophora teres	94.18	0.00e+00	1609.00
IUUC-Rno-105617	Rattus norvegicus	29.92	3.00e-95	341.00
IUUC-Sce-106281	Saccharomyces cerevisiae	32.41	7.00e-126	442.00
IUUC-Sha-107378	Sarcophilus harrisii	28.89	2.00e-88	318.00
IUUC-Sja-107718	Schizosaccharomyces japonicus	37.29	2.00e-151	528.00
IUUC-Spo-108361	Schizosaccharomyces pombe	35.44	1.00e-139	488.00
IUUC-Ssl-108592	Sclerotinia sclerotiorum	57.64	0.00e+00	1027.00
IUUC-Smo-109257	Selaginella moellendorffii	30.06	2.00e-107	382.00
IUUC-Sit-110258	Setaria italica	30.11	4.00e-111	394.00
IUUC-Sly-111521	Solanum lycopersicum	27.87	2.00e-101	361.00
IUUC-Stu-112718	Solanum tuberosum	41.98	7.00e-25	103.00
IUUC-Sbi-114768	Sorghum bicolor	30.69	4.00e-110	390.00
IUUC-Sre-115159	Sporisorium reilianum	29.99	1.00e-109	389.00
IUUC-Ssc-116342	Sus scrofa	23.77	6.00e-39	154.00
IUUC-Tgu-117320	Taeniopygia guttata	28.49	5.00e-94	337.00
IUUC-Tru-118024	Takifugu rubripes	28.38	3.00e-96	344.00
IUUC-Tni-119971	Tetraodon nigroviridis	28.11	6.00e-95	340.00
IUUC-Tca-121248	Theobroma cacao	29.92	2.00e-108	385.00
IUUC-Tre-122079	Trichoderma reesei	53.18	0.00e+00	909.00
IUUC-Tvi-122554	Trichoderma virens	52.40	0.00e+00	902.00
IUUC-Tae-125845	Triticum aestivum	31.06	3.00e-109	387.00
IUUC-Tur-126436	Triticum urartu	30.90	3.00e-94	337.00
IUUC-Tme-126942	Tuber melanosporum	48.70	0.00e+00	736.00
IUUC-Ttr-128964	Tursiops truncatus	27.88	8.00e-94	336.00
IUUC-Uma-129473	Ustilago maydis	32.13	4.00e-106	377.00
IUUC-Vda-129749	Verticillium dahliae	54.06	0.00e+00	882.00
IUUC-Vvi-131511	Vitis vinifera	29.54	2.00e-102	364.00
IUUC-Xtr-132816	Xenopus tropicalis	25.64	2.00e-71	262.00
IUUC-Xma-133672	Xiphophorus maculatus	29.46	2.00e-100	358.00
IUUC-Yli-134602	Yarrowia lipolytica	40.23	9.00e-174	602.00
IUUC-Zma-135559	Zea mays	31.18	7.00e-104	370.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence