iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
iRefIndex	PINA	HINT	Mentha
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.30e-13	51.5	337	374

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tllvsGsdDgtikvWDlrtgvll 36
           Ht ++++la+  s+  l+++++ Dg ++ W l +++++
   Q: 337  HTKRMRSLALspSNrELFATSALDGAVHFWKLQSDRST 374
           999********877899***************999876 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MATTAMNKPK IEQGEEVEVE AEARTFSTQI PDDREALLEF MDQRAKSIQR LKDQISSLDR 60
KLAEERKLMA DAEAKFLQID RVGNGIFSKS KPKAPGKTGS ILGIAEFWNE GNKTKTANEN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCACAAAGAA TTTTTGCGAA TCTGTGTTTA CACTTTACAC ACTCTGGTTT TGTCAATGAG 60
AGCACGGGAG CTGCACACGA CTACATAAGC CCTAGTAAGT GAAGCGGCAA AACCGGAAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

KEGG

ath:AT5G19920

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006060	Arabidopsis lyrata	90.03	0.00e+00	1216.00
IUUC-Bol-015636	Brassica oleracea	67.89	0.00e+00	827.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence