iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Stu-112053

Ensembl Protein ID

PGSC0003DMT400065114

UniProt Accession

M1CDF7; M1CDF7_SOLTU

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PGSC0003DMG400025310	PGSC0003DMT400065114	PGSC0003DMT400065114

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.70e-34	115.9	142	180
UBD/Beta-Prp	9.60e-56	190.4	15	252

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gHt +v+ ++f +d + +vsG+ D ++k+WDl+ g+ll+
   Q: 142  GHTRGVNTIRFtPDgRWVVSGGEDSSVKIWDLTAGKLLH 180
           8***********99999******************9986 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghed 95
           +h+  ++c+k+  +++++l+tg++d+++ +w++ +++++ slsgh++++ +v+f++ + + + g+  +tik+wdl+  k+v+tl+gh +
   Q: 15   AHSLSVNCLKIgRKSSRVLVTGGEDHKVNLWSIGKPDAILSLSGHSSGIDSVSFDSLEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRS 103
           7899999****999*******************************************9999999999********************** PP
   S: 96   svlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvy 184
           +  sl+f+p g++++sGs d  +++wd++ + c++ t +gh++ vn++++ pdg+ +vsG+ D+ v++Wdl  gkll++++  h+++++
   Q: 104  NCISLDFHPFGEFFASGSLDTNLKIWDIRRKGCIH-TYKGHTRGVNTIRFTPDGRWVVSGGEDSSVKIWDLTAGKLLHDFKC-HEGKIQ 190
           ***********************************.********************************************98.****** PP
   S: 185  slsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsir 247
           +++f++  + l++gs d+tvk+wdl++ e + +    t+ v+s++f  ++  l++g +++ ++
   Q: 191  CIDFHPHEFLLATGSADKTVKFWDLESFELIGSAGPETTGVRSMAFNTDGRTLLCGLHEN-LK 252
           ***********************************************9999999997554.33 PP

Organism

Solanum tuberosum

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MTTTKRAYKL QEFVAHSLSV NCLKIGRKSS RVLVTGGEDH KVNLWSIGKP DAILSLSGHS 60
SGIDSVSFDS LEVLVAAGAA SGTIKLWDLE EAKIVRTLTG HRSNCISLDF HPFGEFFASG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGACGGGGAA CAAAGGGTTT ATTGATTTGT TGCGTAATGT GCTGTGAATC GAGAAGTGGG 60
TTTTGTTTGA TTTGGTGGTT TTGACTCTCT CGATGACAAC TACCAAACGT GCTTATAAGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

KEGG

sot:102601996

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002899	Amborella trichopoda	56.68	0.00e+00	856.00
IUUC-Aly-005711	Arabidopsis lyrata	53.58	0.00e+00	811.00
IUUC-Ath-007606	Arabidopsis thaliana	53.29	0.00e+00	814.00
IUUC-Bol-016374	Brassica oleracea	53.96	0.00e+00	820.00
IUUC-Bra-017068	Brassica rapa	52.88	0.00e+00	796.00
IUUC-Cfa-020139	Canis familiaris	43.34	2.00e-91	328.00
IUUC-Cre-022746	Chlamydomonas reinhardtii	43.91	3.00e-82	298.00
IUUC-Csa-023546	Chlorocebus sabaeus	51.55	2.00e-96	345.00
IUUC-Cin-025156	Ciona intestinalis	44.48	1.00e-84	306.00
IUUC-Csv-025962	Ciona savignyi	46.94	5.00e-84	303.00
IUUC-Gac-042004	Gasterosteus aculeatus	51.18	3.00e-96	344.00
IUUC-Gma-044134	Glycine max	60.10	0.00e+00	869.00
IUUC-Hvu-047781	Hordeum vulgare	72.12	2.00e-144	505.00
IUUC-Lch-049674	Latimeria chalumnae	52.86	2.00e-103	368.00
IUUC-Meu-056704	Macropus eugenii	52.17	5.00e-100	357.00
IUUC-Mtr-058053	Medicago truncatula	58.82	0.00e+00	869.00
IUUC-Mla-058881	Melampsora laricipopulina	32.34	8.00e-36	144.00
IUUC-Mdo-062365	Monodelphis domestica	52.19	5.00e-99	353.00
IUUC-Mac-065100	Musa acuminata	55.18	0.00e+00	811.00
IUUC-Mpu-066245	Mustela putorius furo	51.17	4.00e-99	354.00
IUUC-Opr-070855	Ochotona princeps	51.17	2.00e-98	352.00
IUUC-Oan-073293	Ornithorhynchus anatinus	52.67	1.00e-96	346.00
IUUC-Osa-085801	Oryza sativa	42.59	5.00e-178	617.00
IUUC-Pop-099149	Populus trichocarpa	62.85	0.00e+00	973.00
IUUC-Pca-100357	Procavia capensis	56.37	9.00e-75	273.00
IUUC-Ppe-101237	Prunus persica	64.45	0.00e+00	989.00
IUUC-Sly-110991	Solanum lycopersicum	96.79	0.00e+00	1534.00
IUUC-Sbi-114389	Sorghum bicolor	70.03	6.00e-139	486.00
IUUC-Tsy-119036	Tarsius syrichta	58.68	2.00e-39	155.00
IUUC-Tca-121185	Theobroma cacao	60.44	0.00e+00	969.00
IUUC-Tae-125405	Triticum aestivum	71.47	2.00e-145	508.00
IUUC-Uma-129379	Ustilago maydis	28.45	1.00e-28	120.00
IUUC-Vvi-131489	Vitis vinifera	65.44	0.00e+00	1005.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence