iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
microRNA	RAID2
Protein-protein Interaction
IID	iRefIndex	PINA	Mentha
Post-translational Modifications (PTMs)
dbPAF
Protein Expression/Proteomics
GPMDB

Status

Reviewed

Details

Family	Domain	References (PMIDs)
ULD/UDP/UBQ/UBQ_PIM	UBQ_PIM	12826399

Classification

Family	E-value	Score	Start	End
UBD/Alpha-Helix/UBA	1.80e-12	47.2	128	167
ULD/UDP/UBQ/UBQ_PIM	1.00e-19	70.5	3	79

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UBA

   S: 2    ededkleqlveMGFdreealqaLraannnleaAveyLldg 41
           e+e+ +  ++ MG+dre+ + aLraa++n+++Ave+Ll+g
   Q: 128  EQEENVLAITGMGYDREQTIAALRAAFWNPDRAVEFLLNG 167
           78899999999***************************86 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesg..vppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkksk 75
           +++t++tl++ +f+le++ed+t++e+K+++a+e+g  + pe qkLIy+GkiL D+ ++ e+g +  ++v+++++k+k
   Q: 3    LSVTFRTLTQVNFNLELNEDQTIAEVKALVASEKGddYAPELQKLIYNGKILDDSVKVGEVGFDSSKFVVVMLSKRK 79
           589**********************************************************************9986 PP

Organism

Caenorhabditis elegans

Protein Sequence
(Fasta)

MVLSVTFRTL TQVNFNLELN EDQTIAEVKA LVASEKGDDY APELQKLIYN GKILDDSVKV 60
GEVGFDSSKF VVVMLSKRKV TEVAPSSTVA TAAEPVPVAA APASNPAPAA DVAPEAAAPA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ACTTATTTTG TTCTTCAAAA TGGTTTTTTT GTTTTGTTCT TTTATTAATA ATCAAATGTT 60
TGTTTATTTT ATACATATAT ACTGCTTGTT TTGCATTAAT ATCAATCTGT TATCGATATT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome

Interpro

IPR004806--Rad23
IPR006636--STI1_HS-bd
IPR015940--UBA
IPR009060--UBA-like
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom
IPR015360--XPC-bd

PROSITE

PS50030--UBA
PS50053--UBIQUITIN_2

Pfam

PF00627--UBA
PF00240--ubiquitin
PF09280--XPC-binding

PRINTS

PR01839--RAD23PROTEIN

SMART

SM00727--STI1
SM00165--UBA
SM00213--UBQ

Gene Ontology

GO:0005634--C:nucleus
GO:0003684--F:damaged DNA binding
GO:0006289--P:nucleotide-excision repair
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

cel:CELE_ZK20.3

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000770	Aegilops tauschii	31.11	3.00e-20	91.70
IUUC-Aml-001515	Ailuropoda melanoleuca	40.19	1.00e-25	108.00
IUUC-Atr-002756	Amborella trichopoda	32.13	2.00e-23	101.00
IUUC-Apl-003371	Anas platyrhynchos	38.50	9.00e-25	106.00
IUUC-Aca-004704	Anolis carolinensis	38.42	2.00e-19	89.00
IUUC-Aly-005486	Arabidopsis lyrata	32.30	2.00e-23	101.00
IUUC-Ath-006688	Arabidopsis thaliana	31.28	4.00e-22	97.80
IUUC-Ago-007830	Ashbya gossypii	30.56	6.00e-12	63.90
IUUC-Acl-008212	Aspergillus clavatus	39.84	7.00e-13	67.00
IUUC-Afl-008605	Aspergillus flavus	41.67	3.00e-15	74.70
IUUC-Afu-008877	Aspergillus fumigatus	39.84	3.00e-13	68.20
IUUC-Ani-009460	Aspergillus nidulans	39.37	2.00e-13	68.60
IUUC-Ang-009511	Aspergillus niger	36.36	2.00e-03	36.20
IUUC-Aor-010032	Aspergillus oryzae	41.67	3.00e-15	75.10
IUUC-Ate-010458	Aspergillus terreus	31.97	1.00e-21	95.50
IUUC-Ame-011342	Astyanax mexicanus	38.35	5.00e-21	94.00
IUUC-Bgr-012056	Blumeria graminis	31.58	1.00e-17	82.80
IUUC-Bta-012377	Bos taurus	40.29	8.00e-26	109.00
IUUC-Bci-013933	Botrytis cinerea	37.74	4.00e-12	64.30
IUUC-Bdi-014355	Brachypodium distachyon	29.68	2.00e-22	98.60
IUUC-Bol-015354	Brassica oleracea	32.60	5.00e-22	97.40
IUUC-Bra-016970	Brassica rapa	30.88	3.00e-24	104.00
IUUC-Cja-018946	Callithrix jacchus	40.67	1.00e-25	108.00
IUUC-Cfa-020577	Canis familiaris	39.81	2.00e-26	112.00
IUUC-Cpo-021850	Cavia porcellus	40.78	1.00e-27	115.00
IUUC-Cre-022810	Chlamydomonas reinhardtii	35.47	3.00e-21	94.40
IUUC-Csa-023183	Chlorocebus sabaeus	39.90	5.00e-26	110.00
IUUC-Cho-024814	Choloepus hoffmanni	38.60	3.00e-12	64.70
IUUC-Cin-025741	Ciona intestinalis	32.46	4.00e-22	97.40
IUUC-Csv-025823	Ciona savignyi	31.20	1.00e-18	85.50
IUUC-Cgl-026495	Colletotrichum gloeosporioides	39.00	1.00e-09	56.20
IUUC-Cne-027056	Cryptococcus neoformans	33.33	1.00e-09	56.20
IUUC-Cme-027260	Cyanidioschyzon merolae	31.82	1.00e-13	69.70
IUUC-Dre-028369	Danio rerio	35.02	2.00e-28	118.00
IUUC-Dno-030017	Dasypus novemcinctus	38.42	2.00e-24	105.00
IUUC-Dor-030358	Dipodomys ordii	39.34	9.00e-26	109.00
IUUC-Dse-031336	Dothistroma septosporum	40.95	1.00e-12	66.20
IUUC-Dme-032027	Drosophila melanogaster	41.10	6.00e-12	63.90
IUUC-Ete-032583	Echinops telfairi	35.00	1.00e-13	69.70
IUUC-Eca-034243	Equus caballus	38.94	3.00e-24	104.00
IUUC-Eeu-034721	Erinaceus europaeus	35.50	3.00e-14	71.20
IUUC-Fca-036051	Felis catus	39.32	5.00e-26	110.00
IUUC-Fal-037148	Ficedula albicollis	38.22	2.00e-24	105.00
IUUC-Fox-037960	Fusarium oxysporum	43.06	2.00e-11	62.00
IUUC-Fso-038107	Fusarium solani	37.74	2.00e-11	62.00
IUUC-Gmo-038751	Gadus morhua	32.31	7.00e-35	139.00
IUUC-Ggr-040116	Gaeumannomyces graminis	30.56	4.00e-12	64.30
IUUC-Gga-040133	Gallus gallus	37.69	6.00e-21	93.60
IUUC-Gac-041621	Gasterosteus aculeatus	35.86	4.00e-24	104.00
IUUC-Gma-044245	Glycine max	28.18	1.00e-29	122.00
IUUC-Ggo-045084	Gorilla gorilla	40.38	1.00e-25	109.00
IUUC-Hsa-046614	Homo sapiens	39.90	7.00e-26	109.00
IUUC-Hvu-047832	Hordeum vulgare	30.80	1.00e-19	89.40
IUUC-Itr-047875	Ictidomys tridecemlineatus	40.19	1.00e-25	108.00
IUUC-Kpa-049314	Komagataella pastoris	29.48	5.00e-23	100.00
IUUC-Lch-050563	Latimeria chalumnae	33.52	2.00e-16	78.60
IUUC-Lpe-051168	Leersia perrieri	31.16	3.00e-29	120.00
IUUC-Loc-051758	Lepisosteus oculatus	33.02	5.00e-26	110.00
IUUC-Lma-053328	Leptosphaeria maculans	36.00	3.00e-06	41.60
IUUC-Laf-054589	Loxodonta africana	38.24	5.00e-24	103.00
IUUC-Mcc-055860	Macaca mulatta	39.90	5.00e-26	110.00
IUUC-Meu-056459	Macropus eugenii	39.61	5.00e-27	113.00
IUUC-Mor-057287	Magnaporthe oryzae	40.26	2.00e-09	55.50
IUUC-Mpo-057609	Magnaporthe poae	40.95	2.00e-12	64.70
IUUC-Mtr-058239	Medicago truncatula	27.67	3.00e-27	114.00
IUUC-Mla-058961	Melampsora laricipopulina	32.03	3.00e-12	65.10
IUUC-Mga-060060	Meleagris gallopavo	38.46	7.50e-01	26.60
IUUC-Mvi-060220	Microbotryum violaceum	32.61	3.00e-12	65.10
IUUC-Mmr-060819	Microcebus murinus	39.41	9.00e-26	109.00
IUUC-Mdo-062742	Monodelphis domestica	40.10	4.00e-33	134.00
IUUC-Mmu-063258	Mus musculus	38.03	7.00e-25	106.00
IUUC-Mac-065180	Musa acuminata	29.41	1.00e-20	92.40
IUUC-Mpu-066684	Mustela putorius furo	40.38	5.00e-26	110.00
IUUC-Mlu-067787	Myotis lucifugus	39.61	5.00e-25	107.00
IUUC-Nfi-068390	Neosartorya fischeri	39.84	3.00e-13	67.80
IUUC-Ncr-068685	Neurospora crassa	37.98	9.00e-15	73.20
IUUC-Nle-069846	Nomascus leucogenys	34.16	2.00e-20	92.00
IUUC-Opr-070234	Ochotona princeps	50.00	3.00e-06	44.70
IUUC-Ont-072484	Oreochromis niloticus	37.68	2.00e-23	101.00
IUUC-Oan-073572	Ornithorhynchus anatinus	39.41	2.00e-21	95.10
IUUC-Ocu-074968	Oryctolagus cuniculus	40.38	1.00e-15	77.00
IUUC-Oba-074972	Oryza barthii	30.97	6.00e-29	119.00
IUUC-Obr-076909	Oryza brachyantha	30.00	2.00e-21	95.50
IUUC-Ogl-077021	Oryza glaberrima	28.51	1.00e-19	89.40
IUUC-Ogu-078883	Oryza glumaepatula	30.70	4.00e-19	87.80
IUUC-Oin-079817	Oryza indica	30.70	1.00e-18	86.30
IUUC-Olo-080559	Oryza longistaminata	29.01	4.00e-25	107.00
IUUC-Ome-081866	Oryza meridionalis	30.70	4.00e-19	87.40
IUUC-Oni-082812	Oryza nivara	30.97	9.00e-29	119.00
IUUC-Opu-083963	Oryza punctata	32.99	1.00e-24	105.00
IUUC-Oru-084942	Oryza rufipogon	31.55	2.00e-25	108.00
IUUC-Osa-086112	Oryza sativa	30.70	1.00e-18	86.30
IUUC-Ola-086540	Oryzias latipes	36.32	3.00e-21	95.10
IUUC-Olu-087843	Ostreococcus lucimarinus	34.39	3.00e-22	98.20
IUUC-Oga-089075	Otolemur garnettii	31.59	3.00e-32	130.00
IUUC-Oar-090387	Ovis aries	39.13	2.00e-25	108.00
IUUC-Ptr-090912	Pan troglodytes	39.90	6.00e-26	110.00
IUUC-Pan-092140	Papio anubis	39.90	9.00e-26	109.00
IUUC-Psi-093477	Pelodiscus sinensis	57.69	2.00e-11	62.40
IUUC-Pno-095064	Phaeosphaeria nodorum	37.50	6.00e-12	63.90
IUUC-Ppa-095654	Physcomitrella patens	28.83	2.00e-21	95.10
IUUC-Pfo-096607	Poecilia formosa	40.00	4.00e-24	103.00
IUUC-Pab-097738	Pongo abelii	40.38	8.00e-26	109.00
IUUC-Pop-099416	Populus trichocarpa	27.53	2.00e-29	121.00
IUUC-Pca-100348	Procavia capensis	39.61	5.00e-25	107.00
IUUC-Ppe-101830	Prunus persica	32.75	1.00e-23	102.00
IUUC-Pva-102412	Pteropus vampyrus	39.90	4.00e-26	110.00
IUUC-Pgr-103641	Puccinia graminis	36.36	6.00e-10	57.40
IUUC-Ptt-103717	Puccinia triticina	37.59	2.00e-14	72.40
IUUC-Pte-104303	Pyrenophora teres	37.14	3.00e-11	61.20
IUUC-Pyt-104580	Pyrenophora triticirepentis	37.14	3.00e-11	61.20
IUUC-Rno-105569	Rattus norvegicus	40.67	1.00e-26	112.00
IUUC-Sce-106214	Saccharomyces cerevisiae	56.82	8.00e-09	53.50
IUUC-Sha-106918	Sarcophilus harrisii	39.61	4.00e-25	107.00
IUUC-Sja-107851	Schizosaccharomyces japonicus	38.76	2.00e-18	85.50
IUUC-Spo-108298	Schizosaccharomyces pombe	33.94	2.00e-25	108.00
IUUC-Ssl-108382	Sclerotinia sclerotiorum	37.74	4.00e-11	60.80
IUUC-Smo-109518	Selaginella moellendorffii	27.72	3.00e-16	78.20
IUUC-Sit-109813	Setaria italica	30.59	1.00e-22	99.40
IUUC-Sly-111349	Solanum lycopersicum	30.28	7.00e-25	106.00
IUUC-Stu-112306	Solanum tuberosum	28.92	2.00e-25	108.00
IUUC-Sar-112925	Sorex araneus	39.11	4.00e-23	100.00
IUUC-Sbi-113871	Sorghum bicolor	30.49	8.00e-20	90.10
IUUC-Ssc-115460	Sus scrofa	32.79	7.00e-34	136.00
IUUC-Tgu-116918	Taeniopygia guttata	38.22	1.00e-24	105.00
IUUC-Tru-117920	Takifugu rubripes	39.42	5.00e-32	130.00
IUUC-Tsy-119385	Tarsius syrichta	39.76	2.00e-12	64.30
IUUC-Tni-120486	Tetraodon nigroviridis	36.98	1.00e-24	106.00
IUUC-Tca-121594	Theobroma cacao	30.28	2.00e-23	101.00
IUUC-Tre-121911	Trichoderma reesei	40.00	1.00e-11	62.80
IUUC-Tvi-122617	Trichoderma virens	36.52	6.00e-17	80.50
IUUC-Tae-124646	Triticum aestivum	31.11	2.00e-20	92.40
IUUC-Tur-126610	Triticum urartu	31.11	3.00e-20	92.40
IUUC-Tme-127092	Tuber melanosporum	32.47	2.00e-18	85.10
IUUC-Tbe-127603	Tupaia belangeri	38.97	6.00e-18	83.60
IUUC-Ttr-128464	Tursiops truncatus	38.94	4.00e-24	104.00
IUUC-Vda-129946	Verticillium dahliae	40.00	3.00e-12	65.10
IUUC-Vpa-130357	Vicugna pacos	57.69	1.00e-11	62.80
IUUC-Vvi-130842	Vitis vinifera	31.74	4.00e-23	100.00
IUUC-Xtr-132679	Xenopus tropicalis	57.69	2.00e-11	62.40
IUUC-Xma-133647	Xiphophorus maculatus	40.00	4.00e-24	104.00
IUUC-Yli-134615	Yarrowia lipolytica	37.24	1.00e-26	112.00
IUUC-Zma-135929	Zea mays	30.59	2.00e-22	98.60

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence