iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-007068

UUCD1 version

UUC-ArT-00856

Ensembl Protein ID

AT5G40880.1

UniProt Accession

Q9FKR9; Q9FNZ0; C3H59_ARATH

Genbank Protein ID

BAB11350.1; AED94611.1; ABO45703.1; CAC19849.1

Protein Name

Zinc finger CCCH domain-containing protein 59; Zinc finger CCCH domain and WD40 repeat-containing protein 3

Genbank Nucleotide ID

AB011477; CP002688; BT030400; AJ252065

Gene Name

ZFWD3; At5g40880; MHK7.11

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT5G40880	AT5G40880.1	AT5G40880.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.20e-22	79.9	185	224

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllks 38
           gH++++ ++a+ ++ + l s s+Dgt+ +WD  +g +++s
   Q: 185  GHKNDIKGIALpQGsDKLFSVSGDGTLLIWDCNSGQCVRS 224
           8**********9555999******************9986 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MGHQSSWMKQ TVIDSVVQSS KVGVFSMFSM DYKAPRKYSH GRNFGVARQQ DFAADIVTRR 60
PYAPYDNGMK KGPNKLSRNL VWTSKEYKSP EGNRPRQNAA NGSAKPQVIG TGHRVSNQPR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTCGACTCTT GACCTTCAAT TTCCTCCGTC TCTAAATTTC CTTTTCTTTT GGCTCTCTCT 60
GCGATCGAGT TCGAAACCGT TCCCTAATCG AAGATCTAGA TTCAACATAC GTTTTATCTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0238--DNA-binding
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR000571--Znf_CCCH

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
PS50103--ZF_C3H1

Pfam

PF00400--WD40
PF00642--zf-CCCH

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40
SM00356--ZnF_C3H1

Gene Ontology

GO:0003677--F:DNA binding
GO:0046872--F:metal ion binding

KEGG

ath:AT5G40880

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006210	Arabidopsis lyrata	87.07	0.00e+00	841.00
IUUC-Bol-015705	Brassica oleracea	73.09	0.00e+00	659.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence