iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-007152

UUCD1 version

UUC-ArT-00776

Ensembl Protein ID

AT5G49200.1

UniProt Accession

Q9FE91; C3H62_ARATH

Genbank Protein ID

CAC19850.1; BAB10338.1; AED95781.1

Protein Name

Zinc finger CCCH domain-containing protein 62; Zinc finger CCCH domain and WD40 repeat-containing protein 4

Genbank Nucleotide ID

AJ252066; AB016872; CP002688

Gene Name

ZFWD4; At5g49200; K21P3.7

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT5G49200	AT5G49200.1	AT5G49200.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.30e-26	92.3	256	291

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclafsd.tllvsGsdDgtikvWDlrtgvll 36
           gH+++vtc+a  +  +l sGs D+tik+WDl t  ++
   Q: 256  GHSGEVTCFAV-GgQMLYSGSVDKTIKMWDLNTLQCI 291
           8*******999.448****************998886 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MDYKAPRRYY SHGVVARQQD FATDIVTRRR PYVPYDRPNK FSRSLVWTSK EYKSPEGNNM 60
PRTNDVSPKP PVLGLARKNA ACGPMRSSSL RKWVCKYWKD GKCKRGEQCQ FLHSWSCFPG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTTCTTTACT CCGTCTCAAA ATTTCCTTTT TTTGTTGGCT CTCTCCGAAC GAGTTGGAGA 60
AATCGTTAAC CCTAATCGAA GATCTAGATT CCTCTACATA CGTTTGATCT CTCTCTCAGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0238--DNA-binding
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR000571--Znf_CCCH

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
PS50103--ZF_C3H1

Pfam

PF00400--WD40
PF00642--zf-CCCH

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40
SM00356--ZnF_C3H1

Gene Ontology

GO:0003677--F:DNA binding
GO:0046872--F:metal ion binding

KEGG

ath:AT5G49200

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence