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Basic Information Integrated Annotations

Tag Content
iUUCD ID IUUC-Ath-007209
UUCD1 version UUC-ArT-01529
Ensembl Protein ID AT5G49980.1
UniProt Accession Q9LTX2; Q56YW2; TIR1L_ARATH
Genbank Protein ID BAA97019.1; AED95880.1; AAL08287.1; AAM98092.1; AAO42782.1; BAD93754.1
Protein Name Transport inhibitor response 1-like protein
Genbank Nucleotide ID AB024032; CP002688; AY056431; AY139774; BT004536; AK221208
Gene Name At5g49980; K9P8.12
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT5G49980 AT5G49980.1 AT5G49980.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
iRefIndexPINAHINTMentha
Post-translational Modifications (PTMs)
dbPPTdbPTM
Protein Expression/Proteomics
GPMDB
Status Reviewed
Details
Family Domain References (PMIDs)
E3 adaptor/Cullin RING/SCF/F-box F-box 16920877
Organism Arabidopsis thaliana
Protein Sequence
(Fasta)
MTQDRSEMSE DDDDQQSPPL DLPSTAIADP CSSSSSPNKS RNCISNSQTF PDHVLENVLE 60
NVLQFLDSRC DRNAASLVCK SWWRVEALTR SEVFIGNCYA LSPARLTQRF KRVRSLVLKG 120
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Protein Fasta Sequence



>IUUC-Ath-007209|E3,F-box|Arabidopsis thaliana
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Nucleotide Sequence
(Fasta)
AAAAATAAAA AATAATCCCC AAATAATGGA GACGAAGTGG AGAGAGAAAG CTCCCACTCT 60
CTCACACCCC AAAGCTTCTT CTTCTTCTTC CTCTTCTTCC TCTTCCTCTT CTCTAATCTG 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Ath-007209|E3,F-box|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0927--Auxin signaling pathway
KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0833--Ubl conjugation pathway

Interpro

IPR001810--F-box_dom
IPR032675--L_dom-like
IPR006553--Leu-rich_rpt_Cys-con_subtyp

SMART

SM00367--LRR_CC

Gene Ontology

GO:0005634--C:nucleus
GO:0019005--C:SCF ubiquitin ligase complex
GO:0010011--F:auxin binding
GO:0000822--F:inositol hexakisphosphate binding
GO:0009734--P:auxin-activated signaling pathway
GO:0016567--P:protein ubiquitination

KEGG ath:AT5G49980
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000712 Aegilops tauschii 61.47 0.00e+00 682.00
IUUC-Atr-002433 Amborella trichopoda 66.55 0.00e+00 780.00
IUUC-Aly-005787 Arabidopsis lyrata 97.82 0.00e+00 1177.00
IUUC-Bdi-014780 Brachypodium distachyon 64.76 0.00e+00 756.00
IUUC-Bol-015975 Brassica oleracea 90.05 0.00e+00 1111.00
IUUC-Bra-016954 Brassica rapa 91.98 0.00e+00 1082.00
IUUC-Gma-044368 Glycine max 68.88 0.00e+00 859.00
IUUC-Mtr-058693 Medicago truncatula 70.93 0.00e+00 839.00
IUUC-Mac-065664 Musa acuminata 60.28 0.00e+00 685.00
IUUC-Pop-099399 Populus trichocarpa 73.91 0.00e+00 934.00
IUUC-Ppe-101292 Prunus persica 67.68 0.00e+00 823.00
IUUC-Ptt-103982 Puccinia triticina 34.48 3.30e-02 31.20
IUUC-Sly-111561 Solanum lycopersicum 68.56 0.00e+00 867.00
IUUC-Stu-111941 Solanum tuberosum 68.24 0.00e+00 862.00
IUUC-Tca-121179 Theobroma cacao 71.58 0.00e+00 924.00
Created Date 25-Jun-2017

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