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Basic Information Integrated Annotations

Tag Content
iUUCD ID IUUC-Ath-007615
UUCD1 version UUC-ArT-01475
Ensembl Protein ID AT5G51450.2
UniProt Accession Q8W4Q5; Q9FGM8; RIN3_ARATH
Genbank Protein ID BAB09756.1; AED96082.1; AAL32977.1
Protein Name E3 ubiquitin protein ligase RIN3; RING-type E3 ubiquitin transferase RIN3; RPM1-interacting protein 3
Genbank Nucleotide ID AB025621; CP002688; AY062101
Gene Name RIN3; At5g51450; MFG13.16
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT5G51450 AT5G51450.2 AT5G51450.2
AT5G51450 AT5G51450.1 AT5G51450.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
PINAMentha
Protein Expression/Proteomics
Status Reviewed
Details
Family Domain References (PMIDs)
E3 activity/RING/RING RING 16212605; 16531490
UBD/Alpha-Helix/CUE CUE 16212605
Classification
Family E-value Score Start End
E3 activity/RING/RING 1.40e-07 32.8 337 379
UBD/Alpha-Helix/CUE 1.20e-10 42.0 558 595
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
    CaiC+e++ + + l C+H+fh+ Cl w l + + +CP+Cr
   Q: 337 CAICREPMAK-AKRLHCNHLFHLGCLRSW--LDQGLNEVYSCPTCR 379
    ********99.888***************..777899999*****8 PP
   


   UBD/Alpha-Helix/CUE

   S: 4    taleqLkeiFPnldysviqvvLeantgsleaavnnLLeg 42
    ++e+++e++P++++++i ++L ++t+s++ +vnnLL++
   Q: 558 AMAETVREVLPHVPDEIIFQDL-QRTNSVSVTVNNLLQM 595
    79********************.**************98 PP
   

Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description



     E3 ubiquitin protein ligase that acts as positive regulator of RPM1- and RPS2-dependent hypersensitive response (HR), in association with RIN2. Probably not required for RPM1 degradation during HR.
E3 ubiquitin protein ligase that acts as positive regulator of RPM1- and RPS2-dependent hypersensitive response (HR), in association with RIN2. Probably not required for RPM1 degradation during HR.
Protein Sequence
(Fasta)
MGITYLHISV ATTALSFVGL QVWTELSLDR LRADGIITKN ISLGNSENTL ELLLSSHTTI 60
ALLASFVLNI YILLVLSLKT LFFGDLYAIE TRKLVERLAN YIIYKGTFLP FVVPRTVFQG 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Ath-007615|E3,RING;UBD,CUE|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
AAATTTAAGT AACTTTTTAT TTACCGCATG GTTTATTATT TTGAGTTTTT TTCTTCCGCA 60
TTTTATATTC TTCATTTTTC CTTGTCCATC GAGAAAGAGA GACAAAAAGA GGACGCAATT 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Ath-007615|E3,RING;UBD,CUE|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0025--Alternative splicing
KW-0181--Complete proteome
KW-0381--Hypersensitive response
KW-0472--Membrane
KW-0479--Metal-binding
KW-0611--Plant defense
KW-1185--Reference proteome
KW-0808--Transferase
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR003892--CUE
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51140--CUE
PS50089--ZF_RING_2

Pfam

PF02845--CUE
PF13639--zf-RING_2

SMART

SM00546--CUE
SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0005886--C:plasma membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0009626--P:plant-type hypersensitive response
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0000209--P:protein polyubiquitination
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process

KEGG ath:AT5G51450
Orthology
iUUCD ID Species Identity E-value Score
Created Date 25-Jun-2017

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