iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Ptr-091631

UUCD1 version

UUC-PaT-00166

Ensembl Protein ID

ENSPTRP00000006178.4

UniProt Accession

H2Q3I6; H2Q3I6_PANTR

Genbank Protein ID

JAA00497.1; JAA12502.1; JAA23341.1; JAA33323.1

Protein Name

Damage-specific DNA binding protein 2, 48kDa

Genbank Nucleotide ID

AACZ03078014; GABF01009643; GABD01009759; GABE01011416

Gene Name

DDB2

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSPTRG00000003558.6	ENSPTRT00000006693.4	ENSPTRP00000006178.4

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.60e-11	42.9	241	274

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf...sdtllvsGsdDgtikvWDlrt 32
           H+ +vt +a+    d++l+++s D t+k+WDlr+
   Q: 241  HKKKVTHVALnpcCDWFLATASVDQTVKIWDLRQ 274
           7888999999975559***************986 PP

Organism

Pan troglodytes

Protein Sequence
(Fasta)

MAPKKRPETQ KTSEIVLRPR NKRSRSPLEL EPEAKKLCAK GSGPSRRCDS DCLWVGLAGP 60
QILPPCRSIV RTLHQHKLGR ASWPSVQQGL QQSFLHTLDS YRILQKAAPF DRRATSLAWH 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTCCGAGACG GGTGGGGCCG GAGCTCCAAG CTGGTTTGAA CAAGCCCTGG GCATGTTTGG 60
CGGGAAGTTG GCTTAGCTCG GCTACCTGTG GCCCCGCAGT TTTGTAGTCC CCGCCTTGTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR033312--DDB2
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0030054--C:cell junction
GO:0031465--C:Cul4B-RING E3 ubiquitin ligase complex
GO:0005654--C:nucleoplasm
GO:0043234--C:protein complex
GO:0003684--F:damaged DNA binding
GO:0004842--F:ubiquitin-protein transferase activity
GO:0035518--P:histone H2A monoubiquitination
GO:0051865--P:protein autoubiquitination
GO:0000209--P:protein polyubiquitination
GO:0006290--P:pyrimidine dimer repair
GO:0070914--P:UV-damage excision repair

KEGG

ptr:451165

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000470	Aegilops tauschii	29.48	7.00e-31	128.00
IUUC-Aml-002203	Ailuropoda melanoleuca	86.85	0.00e+00	751.00
IUUC-Atr-002957	Amborella trichopoda	30.09	3.00e-35	142.00
IUUC-Apl-003832	Anas platyrhynchos	52.63	1.00e-124	440.00
IUUC-Aca-004358	Anolis carolinensis	52.99	8.00e-129	453.00
IUUC-Aly-006296	Arabidopsis lyrata	30.06	2.00e-34	140.00
IUUC-Ath-007115	Arabidopsis thaliana	30.06	1.00e-35	144.00
IUUC-Ame-010817	Astyanax mexicanus	51.26	1.00e-121	429.00
IUUC-Bta-012914	Bos taurus	84.78	0.00e+00	760.00
IUUC-Bdi-014261	Brachypodium distachyon	29.63	6.00e-31	129.00
IUUC-Bol-015317	Brassica oleracea	30.30	2.00e-35	143.00
IUUC-Bra-016848	Brassica rapa	30.30	3.00e-35	143.00
IUUC-Cja-018967	Callithrix jacchus	97.89	0.00e+00	844.00
IUUC-Cfa-021238	Canis familiaris	86.85	0.00e+00	722.00
IUUC-Cpo-022063	Cavia porcellus	79.67	0.00e+00	704.00
IUUC-Csa-023382	Chlorocebus sabaeus	98.36	0.00e+00	879.00
IUUC-Cho-024805	Choloepus hoffmanni	59.16	2.00e-90	325.00
IUUC-Dre-028732	Danio rerio	48.48	3.00e-106	378.00
IUUC-Dor-030461	Dipodomys ordii	80.71	9.00e-125	439.00
IUUC-Ete-033038	Echinops telfairi	73.77	0.00e+00	650.00
IUUC-Eca-033772	Equus caballus	87.12	0.00e+00	723.00
IUUC-Eeu-034662	Erinaceus europaeus	62.81	1.00e-65	243.00
IUUC-Fca-036095	Felis catus	86.22	0.00e+00	726.00
IUUC-Gmo-039683	Gadus morhua	49.44	8.00e-106	377.00
IUUC-Gga-040530	Gallus gallus	60.33	1.00e-125	442.00
IUUC-Gac-041517	Gasterosteus aculeatus	49.04	5.00e-98	351.00
IUUC-Gma-043378	Glycine max	31.02	2.00e-38	153.00
IUUC-Ggo-045364	Gorilla gorilla	99.77	0.00e+00	890.00
IUUC-Hsa-046354	Homo sapiens	100.00	0.00e+00	892.00
IUUC-Hvu-047151	Hordeum vulgare	30.82	6.00e-28	117.00
IUUC-Itr-048304	Ictidomys tridecemlineatus	86.40	0.00e+00	762.00
IUUC-Lpe-051256	Leersia perrieri	30.06	1.00e-30	127.00
IUUC-Loc-052398	Lepisosteus oculatus	58.29	7.00e-126	443.00
IUUC-Laf-053562	Loxodonta africana	84.31	0.00e+00	726.00
IUUC-Mcc-055197	Macaca mulatta	76.40	0.00e+00	635.00
IUUC-Meu-056151	Macropus eugenii	76.00	2.00e-121	428.00
IUUC-Mtr-057940	Medicago truncatula	30.79	5.00e-36	145.00
IUUC-Mga-059923	Meleagris gallopavo	60.33	2.00e-132	465.00
IUUC-Mmr-061465	Microcebus murinus	95.32	2.00e-161	561.00
IUUC-Mdo-063063	Monodelphis domestica	66.13	2.00e-160	558.00
IUUC-Mmu-064294	Mus musculus	78.45	0.00e+00	685.00
IUUC-Mac-065598	Musa acuminata	31.34	7.00e-33	135.00
IUUC-Mpu-066831	Mustela putorius furo	86.62	0.00e+00	751.00
IUUC-Mlu-067222	Myotis lucifugus	83.22	0.00e+00	735.00
IUUC-Nle-069581	Nomascus leucogenys	98.83	0.00e+00	885.00
IUUC-Opr-070644	Ochotona princeps	84.31	0.00e+00	734.00
IUUC-Ont-072605	Oreochromis niloticus	55.18	1.00e-115	409.00
IUUC-Oan-072973	Ornithorhynchus anatinus	71.35	6.00e-151	526.00
IUUC-Ocu-074615	Oryctolagus cuniculus	84.31	0.00e+00	760.00
IUUC-Oba-075283	Oryza barthii	29.63	1.00e-30	127.00
IUUC-Obr-076605	Oryza brachyantha	30.37	2.00e-32	133.00
IUUC-Ogl-077512	Oryza glaberrima	29.63	1.00e-30	127.00
IUUC-Ogu-078329	Oryza glumaepatula	29.63	1.00e-30	127.00
IUUC-Oin-079980	Oryza indica	29.63	2.00e-30	127.00
IUUC-Olo-080516	Oryza longistaminata	29.32	7.00e-31	128.00
IUUC-Ome-081415	Oryza meridionalis	29.63	1.00e-30	127.00
IUUC-Oni-082985	Oryza nivara	29.63	2.00e-30	127.00
IUUC-Opu-084159	Oryza punctata	29.94	6.00e-31	128.00
IUUC-Oru-085137	Oryza rufipogon	29.63	9.00e-31	128.00
IUUC-Osa-085614	Oryza sativa	29.63	7.00e-31	128.00
IUUC-Ola-087044	Oryzias latipes	46.43	3.00e-103	368.00
IUUC-Oga-088274	Otolemur garnettii	89.70	0.00e+00	784.00
IUUC-Oar-089826	Ovis aries	85.01	0.00e+00	768.00
IUUC-Pan-092535	Papio anubis	98.83	0.00e+00	884.00
IUUC-Psi-093815	Pelodiscus sinensis	55.69	4.00e-126	444.00
IUUC-Pma-094474	Petromyzon marinus	48.05	8.00e-96	343.00
IUUC-Ppa-095414	Physcomitrella patens	27.20	6.00e-27	115.00
IUUC-Pfo-096559	Poecilia formosa	50.00	2.00e-102	366.00
IUUC-Pab-098528	Pongo abelii	99.06	0.00e+00	885.00
IUUC-Pop-100064	Populus trichocarpa	28.83	2.00e-34	140.00
IUUC-Pca-100803	Procavia capensis	81.50	0.00e+00	717.00
IUUC-Ppe-101966	Prunus persica	30.18	4.00e-36	145.00
IUUC-Pva-103213	Pteropus vampyrus	84.78	0.00e+00	721.00
IUUC-Rno-105087	Rattus norvegicus	78.91	0.00e+00	694.00
IUUC-Sha-107466	Sarcophilus harrisii	71.75	3.00e-155	541.00
IUUC-Smo-108958	Selaginella moellendorffii	28.06	4.00e-27	116.00
IUUC-Sit-109968	Setaria italica	29.01	4.00e-29	122.00
IUUC-Sly-111495	Solanum lycopersicum	30.46	3.00e-34	139.00
IUUC-Stu-112182	Solanum tuberosum	26.59	8.00e-14	72.40
IUUC-Sar-113272	Sorex araneus	78.47	5.00e-163	566.00
IUUC-Sbi-114706	Sorghum bicolor	27.81	3.00e-26	113.00
IUUC-Ssc-115437	Sus scrofa	86.65	0.00e+00	762.00
IUUC-Tgu-116602	Taeniopygia guttata	58.97	9.00e-123	433.00
IUUC-Tru-118698	Takifugu rubripes	49.58	6.00e-99	354.00
IUUC-Tsy-119027	Tarsius syrichta	89.21	0.00e+00	723.00
IUUC-Tni-119787	Tetraodon nigroviridis	48.88	4.00e-103	368.00
IUUC-Tca-121447	Theobroma cacao	29.73	6.00e-37	148.00
IUUC-Tae-125839	Triticum aestivum	29.79	3.00e-31	129.00
IUUC-Tur-126724	Triticum urartu	29.79	3.00e-31	129.00
IUUC-Tbe-127680	Tupaia belangeri	84.73	3.00e-139	488.00
IUUC-Ttr-128201	Tursiops truncatus	76.81	0.00e+00	652.00
IUUC-Vpa-130451	Vicugna pacos	69.60	2.00e-108	385.00
IUUC-Vvi-131001	Vitis vinifera	30.40	2.00e-36	147.00
IUUC-Xtr-132266	Xenopus tropicalis	62.40	1.00e-130	459.00
IUUC-Xma-133034	Xiphophorus maculatus	53.68	2.00e-114	405.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence