iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

   S: 1    CaiCledfkdg..plvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           C iCl+df++g  ++v p CgHvfh dC+  w       s   +CPlCr
   Q: 140  CVICLSDFEEGetVKVIPhCGHVFHVDCVDTW------LSSYVTCPLCR 182
           ********66666999999*************......**********8 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

METKHLRKLL QLYQACGGEQ ELTKTVQNVT SSPLTPTPPP QPPSALDSTM ALTIFILLVA 60
LFFMGFFSVY FRHFADSSSS TVDISSMPRT RSSRMSPRRL STSVVVSRPY SFRRGLDSQA 120

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Nucleotide Sequence
(Fasta)

GTTTCTTAAT AGACTTCAGT GATGGAGACC AAGCACCTAC GCAAGCTTCT CCAGCTCTAC 60
CAAGCTTGTG GTGGCGAACA AGAGCTCACA AAAACCGTCC AAAACGTCAC ATCATCACCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0808--Transferase
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

ath:AT2G27940

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-003080	Amborella trichopoda	34.09	8.00e-17	79.70
IUUC-Aly-005871	Arabidopsis lyrata	79.50	7.00e-97	345.00
IUUC-Bra-017714	Brassica rapa	69.47	8.00e-36	141.00
IUUC-Mac-064565	Musa acuminata	36.81	2.00e-17	81.60
IUUC-Sly-111629	Solanum lycopersicum	46.50	3.00e-36	144.00
IUUC-Stu-112149	Solanum tuberosum	46.11	4.00e-34	136.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence