iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Aml-002104

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Ubiquitinyl hydrolase 1

Genbank Nucleotide ID

ACTA01066599

Gene Name

USP5

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSAMEG00000013920.1	ENSAMET00000015341.1	ENSAMEP00000014733.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
DUB/USP	8.30e-64	216.0	328	857
UBD/Alpha-Helix/UBA	6.00e-23	80.4	727	764

Active Site

Position(s)	Description	Evidence
337	Nucleophile	{ECO:0000256\|PIRSR:PIRSR016308-1}
820	Proton acceptor	{ECO:0000256\|PIRSR:PIRSR016308-1}

Domain Profile

DUB/USP

   S: 1    tGlkNlgNtCYmNSvLQcLsnipelrelllekkkeklneenpkepkgellkslqklfeel....................wkskkkavs 69
           tG++NlgN+CY+NSv+Q+L++ip++++ + + k ek+ +++p++p+++++++++kl + l                    +k+ +  ++
   Q: 328  TGIRNLGNSCYLNSVVQVLFSIPDFQRKYVD-KLEKIFQNAPTDPTQDFSTQVAKLGHGLlsgeyskpapesgdgeqvpeQKEVQDGIA 415
           7******************************.99999999********************66666666666666655443366666*** PP
   S: 70   prellkalkkeaeefsgyeqqDaqEflaflldqleeelkkeknkpkeeeeeedkselsdeaeekkkkknkslisdlFqgqlksqikcle 158
           pr++++ ++k ++efs+++qqDaqEf+ +l++ +e+++                             ++++  +++F++ ++++ikcl+
   Q: 416  PRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNC-----------------------------RSSENPNEVFRFLVEEKIKCLA 475
           **************************************.............................6788899*************** PP
   S: 159  cdnvssreepfldlslpvpgkeetkke...........................slqdcLesftkeeelegenkyycekckkkqeaekk 220
            ++v+ ++   + ++lpvp++   +ke                            +++cLe++ ++e++++   ++++  ++k+ a+k+
   Q: 476  TEKVKYTQRVDYIMQLPVPMDAALNKEelleyeekkrqaeeeklplpelvraqvPFSSCLEAYGAPEQVDD---FWSTALQAKSVAVKT 561
           **********************999989*****************************************97...*************** PP
   S: 221  lklkklPevLilhLkRfsfseeqksrekinkkvefpleLdlspfcts.......................................... 267
           +++ ++P++L++++k+f+f  + ++++k++ ++e+p+eLd+s+   +                                          
   Q: 562  TRFASFPDYLVIQIKKFTFGLD-WVPKKLDVSIEMPEELDISQLRGTglqpgeeelpdiapplvtpdepkgslgfygnededsfcsphf 649
           *******************997.*******************98888788888888888888888888888888888888777777777 PP
   S: 268  .................................................................................peekqke. 274
                                                                                            +     + 
   Q: 650  ssptspmldesviiqlvemgfpmdacrkavyytgnsgaeaamnwvmshmddpdfanplilpgssgpgstsaaadpppedcvS-----Ti 733
           7777777777777777777777777777777777666666666666666666666666666666666555555555555550.....05 PP
   S: 275  ..................................................................kkkYeLiavvvHsG.slssGHYv 296
                                                                             + kY+L+a ++H+G s+ +GHYv
   Q: 734  vsmgfsrdqalkalratnnsleravdwifshiddldaeaamdisegrsaadsisesvpvgpkvrdgPGKYQLFAFISHMGtSTMCGHYV 822
           555555555555566666666667777777777777777777777777778888888888888888*********************** PP
   S: 297  ayvknekgkWllfdDskVtevkeeevleetgstaYvlfYkr 337
           +++k+ +g+W+ ++D+kV ++  e+  +   + +Y++fY+r
   Q: 823  CHIKK-EGRWVIYNDQKVCAS--EKPPK---DLGYIYFYQR 857
           *****.9***********999..78888...89******98 PP

UBD/Alpha-Helix/UBA

   S: 4    edkleqlveMGFdreealqaLraannnleaAveyLldg 41
           ed +  +v+MGF+r++al+aLra+nn+le+Av++++++
   Q: 727  EDCVSTIVSMGFSRDQALKALRATNNSLERAVDWIFSH 764
           8999********************************97 PP

Organism

Ailuropoda melanoleuca

Protein Sequence
(Fasta)

MAELSEEALL SVLPTIRVPK AGDRVHKDEC AFSFDTPESE GGLYICMNTF LGFGKQYVEK 60
HFNKTGQRVY LHLRRTRRPK EEDTTTSTGD PPRKKPTRLA IGMEGGFDLS EEKFEYDEDV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCGGAGC TGAGTGAGGA GGCGCTGCTG TCAGTATTAC CGACGATCCG GGTTCCTAAG 60
GCTGGAGACC GGGTCCACAA AGACGAGTGC GCCTTCTCCT TCGACACACC GGTAAGCCCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0378--Hydrolase
KW-0479--Metal-binding
KW-0645--Protease
KW-1185--Reference proteome
KW-0788--Thiol protease
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001394--Peptidase_C19_UCH
IPR015940--UBA
IPR009060--UBA-like
IPR016652--Ubiquitinyl_hydrolase
IPR018200--USP_CS
IPR028889--USP_dom
IPR013083--Znf_RING/FYVE/PHD
IPR001607--Znf_UBP

PROSITE

PS50030--UBA
PS00972--USP_1
PS00973--USP_2
PS50235--USP_3
PS50271--ZF_UBP

Pfam

PF00627--UBA
PF00443--UCH
PF02148--zf-UBP

SMART

SM00165--UBA
SM00290--ZnF_UBP

Gene Ontology

GO:0004843--F:thiol-dependent ubiquitin-specific protease activity
GO:0008270--F:zinc ion binding
GO:0032436--P:positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0071108--P:protein K48-linked deubiquitination
GO:0006511--P:ubiquitin-dependent protein catabolic process

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000394	Aegilops tauschii	44.08	0.00e+00	643.00
IUUC-Atr-002580	Amborella trichopoda	45.88	0.00e+00	729.00
IUUC-Apl-003774	Anas platyrhynchos	91.09	0.00e+00	1522.00
IUUC-Aca-005368	Anolis carolinensis	86.16	0.00e+00	1502.00
IUUC-Aly-005727	Arabidopsis lyrata	46.82	0.00e+00	723.00
IUUC-Ath-006974	Arabidopsis thaliana	47.04	0.00e+00	723.00
IUUC-Ago-007890	Ashbya gossypii	29.00	1.00e-82	300.00
IUUC-Acl-008057	Aspergillus clavatus	33.64	2.00e-123	436.00
IUUC-Afl-008547	Aspergillus flavus	36.21	7.00e-117	414.00
IUUC-Afu-008805	Aspergillus fumigatus	34.07	4.00e-114	405.00
IUUC-Ani-009441	Aspergillus nidulans	32.14	5.00e-97	348.00
IUUC-Ang-009720	Aspergillus niger	33.99	6.00e-119	421.00
IUUC-Aor-010111	Aspergillus oryzae	33.91	1.00e-126	446.00
IUUC-Ate-010531	Aspergillus terreus	31.96	2.00e-103	369.00
IUUC-Ame-011893	Astyanax mexicanus	65.19	0.00e+00	992.00
IUUC-Bgr-012183	Blumeria graminis	33.76	3.00e-122	432.00
IUUC-Bta-013179	Bos taurus	98.12	0.00e+00	1646.00
IUUC-Bci-013858	Botrytis cinerea	34.88	3.00e-131	462.00
IUUC-Bdi-014904	Brachypodium distachyon	46.63	0.00e+00	705.00
IUUC-Bol-015296	Brassica oleracea	47.33	0.00e+00	737.00
IUUC-Bra-017939	Brassica rapa	47.33	0.00e+00	740.00
IUUC-Cel-018625	Caenorhabditis elegans	34.85	5.00e-135	475.00
IUUC-Cja-019063	Callithrix jacchus	97.29	0.00e+00	1635.00
IUUC-Cfa-020976	Canis familiaris	96.23	0.00e+00	1597.00
IUUC-Cpo-022265	Cavia porcellus	95.41	0.00e+00	1580.00
IUUC-Cre-022640	Chlamydomonas reinhardtii	39.30	3.00e-112	399.00
IUUC-Csa-024177	Chlorocebus sabaeus	94.68	0.00e+00	1445.00
IUUC-Cho-024702	Choloepus hoffmanni	90.18	0.00e+00	1001.00
IUUC-Cin-025411	Ciona intestinalis	50.00	0.00e+00	827.00
IUUC-Csv-026347	Ciona savignyi	46.30	0.00e+00	785.00
IUUC-Cgl-026667	Colletotrichum gloeosporioides	34.52	2.00e-114	406.00
IUUC-Cne-026831	Cryptococcus neoformans	35.18	2.00e-128	453.00
IUUC-Dre-027982	Danio rerio	66.97	0.00e+00	1095.00
IUUC-Dno-029034	Dasypus novemcinctus	98.00	0.00e+00	1657.00
IUUC-Dor-030479	Dipodomys ordii	93.91	0.00e+00	715.00
IUUC-Dse-031467	Dothistroma septosporum	35.88	8.00e-131	461.00
IUUC-Dme-032075	Drosophila melanogaster	49.25	0.00e+00	801.00
IUUC-Ete-032865	Echinops telfairi	87.21	0.00e+00	1464.00
IUUC-Eca-034059	Equus caballus	98.48	0.00e+00	1660.00
IUUC-Eeu-035304	Erinaceus europaeus	92.70	0.00e+00	1499.00
IUUC-Fca-035515	Felis catus	98.94	0.00e+00	1657.00
IUUC-Fal-037271	Ficedula albicollis	87.96	0.00e+00	1425.00
IUUC-Fox-037745	Fusarium oxysporum	35.12	8.00e-130	457.00
IUUC-Fso-038158	Fusarium solani	35.57	2.00e-129	456.00
IUUC-Gmo-039071	Gadus morhua	64.81	0.00e+00	1075.00
IUUC-Ggr-040098	Gaeumannomyces graminis	34.10	2.00e-119	423.00
IUUC-Gga-040635	Gallus gallus	91.05	0.00e+00	1594.00
IUUC-Gac-042528	Gasterosteus aculeatus	64.04	0.00e+00	1086.00
IUUC-Gma-043614	Glycine max	46.51	0.00e+00	697.00
IUUC-Ggo-044602	Gorilla gorilla	97.88	0.00e+00	1640.00
IUUC-Hsa-045959	Homo sapiens	97.88	0.00e+00	1640.00
IUUC-Hvu-047563	Hordeum vulgare	47.24	8.00e-168	583.00
IUUC-Itr-048712	Ictidomys tridecemlineatus	97.76	0.00e+00	1640.00
IUUC-Kpa-049156	Komagataella pastoris	32.99	9.00e-115	407.00
IUUC-Lch-049648	Latimeria chalumnae	81.46	0.00e+00	1363.00
IUUC-Lpe-051523	Leersia perrieri	46.32	0.00e+00	708.00
IUUC-Loc-052520	Lepisosteus oculatus	62.96	0.00e+00	1030.00
IUUC-Lma-053216	Leptosphaeria maculans	34.64	1.00e-113	405.00
IUUC-Laf-054327	Loxodonta africana	97.64	0.00e+00	1637.00
IUUC-Mcc-055443	Macaca mulatta	97.76	0.00e+00	1637.00
IUUC-Meu-056298	Macropus eugenii	93.60	0.00e+00	1063.00
IUUC-Mor-057106	Magnaporthe oryzae	35.48	7.00e-132	464.00
IUUC-Mpo-057589	Magnaporthe poae	34.75	5.00e-124	438.00
IUUC-Mtr-058680	Medicago truncatula	47.97	0.00e+00	729.00
IUUC-Mla-058903	Melampsora laricipopulina	32.50	3.00e-120	426.00
IUUC-Mga-059669	Meleagris gallopavo	90.21	0.00e+00	1511.00
IUUC-Mvi-060476	Microbotryum violaceum	34.51	4.00e-120	425.00
IUUC-Mmr-060575	Microcebus murinus	98.12	0.00e+00	1648.00
IUUC-Mdo-062183	Monodelphis domestica	91.99	0.00e+00	1535.00
IUUC-Mmu-063592	Mus musculus	97.76	0.00e+00	1640.00
IUUC-Mac-065634	Musa acuminata	42.81	0.00e+00	682.00
IUUC-Mpu-066082	Mustela putorius furo	95.64	0.00e+00	1585.00
IUUC-Mlu-067345	Myotis lucifugus	96.71	0.00e+00	1630.00
IUUC-Nfi-068558	Neosartorya fischeri	34.85	2.00e-122	433.00
IUUC-Ncr-068960	Neurospora crassa	35.03	6.00e-117	414.00
IUUC-Nle-070173	Nomascus leucogenys	95.17	0.00e+00	1578.00
IUUC-Opr-070556	Ochotona princeps	96.94	0.00e+00	1633.00
IUUC-Ont-071502	Oreochromis niloticus	64.70	0.00e+00	1082.00
IUUC-Ocu-074861	Oryctolagus cuniculus	95.05	0.00e+00	1583.00
IUUC-Oba-075109	Oryza barthii	46.03	0.00e+00	711.00
IUUC-Obr-076292	Oryza brachyantha	47.32	0.00e+00	704.00
IUUC-Ogl-077065	Oryza glaberrima	47.32	0.00e+00	740.00
IUUC-Ogu-078776	Oryza glumaepatula	46.03	0.00e+00	723.00
IUUC-Oin-080048	Oryza indica	46.85	0.00e+00	734.00
IUUC-Olo-080711	Oryza longistaminata	44.19	0.00e+00	653.00
IUUC-Ome-081506	Oryza meridionalis	45.23	0.00e+00	664.00
IUUC-Oni-082320	Oryza nivara	45.49	0.00e+00	709.00
IUUC-Opu-083801	Oryza punctata	46.21	0.00e+00	703.00
IUUC-Oru-085139	Oryza rufipogon	45.49	0.00e+00	710.00
IUUC-Osa-085713	Oryza sativa	47.44	0.00e+00	743.00
IUUC-Ola-086951	Oryzias latipes	65.27	0.00e+00	1073.00
IUUC-Olu-087822	Ostreococcus lucimarinus	41.25	1.00e-179	623.00
IUUC-Oga-088625	Otolemur garnettii	97.53	0.00e+00	1633.00
IUUC-Oar-089995	Ovis aries	97.18	0.00e+00	1632.00
IUUC-Ptr-090640	Pan troglodytes	95.29	0.00e+00	1617.00
IUUC-Pan-091974	Papio anubis	97.53	0.00e+00	1641.00
IUUC-Psi-093957	Pelodiscus sinensis	89.79	0.00e+00	1592.00
IUUC-Pma-094242	Petromyzon marinus	71.39	1.00e-164	572.00
IUUC-Pno-094835	Phaeosphaeria nodorum	34.94	1.00e-107	384.00
IUUC-Ppa-095901	Physcomitrella patens	49.14	0.00e+00	776.00
IUUC-Pfo-097148	Poecilia formosa	66.04	0.00e+00	1093.00
IUUC-Pab-098068	Pongo abelii	90.34	0.00e+00	1470.00
IUUC-Pop-098943	Populus trichocarpa	46.74	0.00e+00	711.00
IUUC-Pca-100738	Procavia capensis	98.34	0.00e+00	1140.00
IUUC-Ppe-101315	Prunus persica	46.87	0.00e+00	717.00
IUUC-Pva-102154	Pteropus vampyrus	96.58	0.00e+00	1618.00
IUUC-Pgr-103343	Puccinia graminis	33.29	1.00e-107	383.00
IUUC-Ptt-103928	Puccinia triticina	30.36	2.00e-105	376.00
IUUC-Pte-104306	Pyrenophora teres	31.21	8.00e-104	371.00
IUUC-Pyt-104696	Pyrenophora triticirepentis	33.18	2.00e-106	380.00
IUUC-Rno-105801	Rattus norvegicus	97.53	0.00e+00	1639.00
IUUC-Sce-106304	Saccharomyces cerevisiae	28.19	4.00e-73	269.00
IUUC-Sha-107635	Sarcophilus harrisii	92.23	0.00e+00	1545.00
IUUC-Sja-107678	Schizosaccharomyces japonicus	32.41	2.00e-107	383.00
IUUC-Spo-108144	Schizosaccharomyces pombe	32.25	2.00e-113	403.00
IUUC-Smo-108848	Selaginella moellendorffii	47.95	0.00e+00	733.00
IUUC-Sit-110728	Setaria italica	47.79	0.00e+00	763.00
IUUC-Sly-111523	Solanum lycopersicum	47.28	0.00e+00	752.00
IUUC-Sbi-114419	Sorghum bicolor	46.92	0.00e+00	744.00
IUUC-Sre-115225	Sporisorium reilianum	34.98	8.00e-126	444.00
IUUC-Ssc-115686	Sus scrofa	97.29	0.00e+00	1634.00
IUUC-Tgu-117346	Taeniopygia guttata	90.71	0.00e+00	1563.00
IUUC-Tru-118350	Takifugu rubripes	64.81	0.00e+00	1102.00
IUUC-Tni-120658	Tetraodon nigroviridis	65.78	0.00e+00	1090.00
IUUC-Tca-121585	Theobroma cacao	47.39	0.00e+00	716.00
IUUC-Tre-122043	Trichoderma reesei	34.41	5.00e-119	421.00
IUUC-Tvi-122303	Trichoderma virens	34.38	9.00e-126	444.00
IUUC-Tae-125686	Triticum aestivum	46.96	0.00e+00	726.00
IUUC-Tur-126732	Triticum urartu	44.50	0.00e+00	681.00
IUUC-Tme-126909	Tuber melanosporum	34.45	2.00e-118	420.00
IUUC-Tbe-127261	Tupaia belangeri	91.68	0.00e+00	1045.00
IUUC-Uma-129599	Ustilago maydis	34.09	1.00e-129	457.00
IUUC-Vda-129688	Verticillium dahliae	33.41	1.00e-119	424.00
IUUC-Vvi-131116	Vitis vinifera	47.05	0.00e+00	696.00
IUUC-Xtr-131953	Xenopus tropicalis	79.09	0.00e+00	1347.00
IUUC-Xma-133837	Xiphophorus maculatus	66.05	0.00e+00	1096.00
IUUC-Yli-134510	Yarrowia lipolytica	35.37	6.00e-130	458.00
IUUC-Zma-135786	Zea mays	47.04	0.00e+00	711.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence