iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pgr-103637

Ensembl Protein ID

EFP77682

UniProt Accession

E3K057; E3K057_PUCGT

Genbank Protein ID

EFP77682.1

Protein Name

Ribosome biogenesis protein YTM1

Genbank Nucleotide ID

DS178268

Gene Name

YTM1; PGTG_03638

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PGTG_03638	EFP77682	EFP77682

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.90e-27	92.8	393	430

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.....sdtllvsGsdDgtikvWDlrtg 33
           gH+++v+ ++      ++  ++sGs+Dgt+k+WD+r+ 
   Q: 393  GHAAPVSTVSSnpsraNSLQILSGSYDGTCKIWDTRST 430
           677888887666566444669*************9875 PP

Organism

Puccinia graminis

Functional Description
(View)

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Protein Sequence
(Fasta)

MASITIQSES TTSNHAQHQQ PTMITVRLTT KSIRYSIPNA KYLVPSDWKR FQLSQLINKV 60
LQLAQPVPFD FVVNDQLLRT SVKNFIDSHG LSTESVLEIE YLESVLPPKF IQSLEHDDWI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CAGCAAGAGA GCACCTGGCA GGGGAACACC TCGAACCGAC AAGAGACATC CACAATGGCA 60
TCAATCACTA TCCAGTCAGA AAGCACGACA TCCAATCATG CTCAGCATCA GCAGCCAACG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000460--P:maturation of 5.8S rRNA
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000470--P:maturation of LSU-rRNA
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

pgr:PGTG_03638

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	27.23	2.00e-40	158.00
IUUC-Aml-001997	Ailuropoda melanoleuca	29.01	2.00e-33	135.00
IUUC-Atr-002544	Amborella trichopoda	25.42	3.00e-33	134.00
IUUC-Apl-003981	Anas platyrhynchos	30.33	4.00e-35	140.00
IUUC-Aca-004370	Anolis carolinensis	29.61	6.00e-43	166.00
IUUC-Aly-006455	Arabidopsis lyrata	27.10	2.00e-36	144.00
IUUC-Ath-006669	Arabidopsis thaliana	26.57	5.00e-33	133.00
IUUC-Ago-007864	Ashbya gossypii	29.52	3.00e-48	184.00
IUUC-Acl-008177	Aspergillus clavatus	27.90	8.00e-49	186.00
IUUC-Afl-008617	Aspergillus flavus	28.21	1.00e-46	179.00
IUUC-Afu-008752	Aspergillus fumigatus	26.91	5.00e-43	167.00
IUUC-Ani-009136	Aspergillus nidulans	28.28	1.00e-48	185.00
IUUC-Ang-009701	Aspergillus niger	28.51	1.00e-42	165.00
IUUC-Aor-009884	Aspergillus oryzae	28.21	2.00e-46	178.00
IUUC-Ate-010472	Aspergillus terreus	25.42	4.00e-17	80.50
IUUC-Ame-011432	Astyanax mexicanus	27.56	4.00e-44	170.00
IUUC-Bgr-012218	Blumeria graminis	28.21	2.00e-45	174.00
IUUC-Bta-012829	Bos taurus	29.46	2.00e-35	141.00
IUUC-Bci-013953	Botrytis cinerea	25.45	6.00e-44	170.00
IUUC-Bdi-014351	Brachypodium distachyon	28.60	1.00e-41	162.00
IUUC-Bol-015618	Brassica oleracea	26.34	1.00e-33	135.00
IUUC-Bra-017876	Brassica rapa	26.16	2.00e-36	144.00
IUUC-Cel-018569	Caenorhabditis elegans	23.24	7.00e-16	76.60
IUUC-Cja-019468	Callithrix jacchus	29.03	9.00e-33	132.00
IUUC-Cfa-020471	Canis familiaris	28.82	5.00e-31	126.00
IUUC-Cpo-022260	Cavia porcellus	28.82	5.00e-33	133.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	27.53	8.00e-34	135.00
IUUC-Csa-023989	Chlorocebus sabaeus	29.25	2.00e-33	134.00
IUUC-Cho-024426	Choloepus hoffmanni	29.35	4.00e-25	107.00
IUUC-Cin-025789	Ciona intestinalis	25.05	1.00e-32	132.00
IUUC-Cgl-026562	Colletotrichum gloeosporioides	32.80	1.00e-08	51.20
IUUC-Cne-027063	Cryptococcus neoformans	29.94	3.00e-53	201.00
IUUC-Dre-027907	Danio rerio	28.60	3.00e-45	174.00
IUUC-Dno-029225	Dasypus novemcinctus	29.46	2.00e-35	141.00
IUUC-Dor-031082	Dipodomys ordii	26.24	2.00e-14	72.00
IUUC-Dse-031308	Dothistroma septosporum	28.99	4.00e-51	193.00
IUUC-Dme-032189	Drosophila melanogaster	25.55	2.00e-28	118.00
IUUC-Ete-032247	Echinops telfairi	27.53	8.00e-29	119.00
IUUC-Eca-034285	Equus caballus	29.68	2.00e-35	141.00
IUUC-Eeu-035322	Erinaceus europaeus	26.35	3.00e-24	104.00
IUUC-Fca-036114	Felis catus	29.25	1.00e-34	139.00
IUUC-Fal-036891	Ficedula albicollis	30.03	3.00e-30	124.00
IUUC-Fox-037965	Fusarium oxysporum	29.32	7.00e-49	186.00
IUUC-Fso-038244	Fusarium solani	30.08	4.00e-47	180.00
IUUC-Gmo-039040	Gadus morhua	29.70	4.00e-46	176.00
IUUC-Ggr-040093	Gaeumannomyces graminis	26.12	2.00e-37	148.00
IUUC-Gga-040610	Gallus gallus	30.70	4.00e-40	157.00
IUUC-Gac-042117	Gasterosteus aculeatus	29.94	3.00e-46	177.00
IUUC-Gma-043756	Glycine max	30.00	1.00e-42	165.00
IUUC-Ggo-045179	Gorilla gorilla	28.82	6.00e-33	133.00
IUUC-Hsa-046114	Homo sapiens	29.25	3.00e-33	134.00
IUUC-Hvu-047331	Hordeum vulgare	27.40	2.00e-35	141.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	29.25	4.00e-34	137.00
IUUC-Kpa-049304	Komagataella pastoris	31.66	7.00e-52	196.00
IUUC-Lch-050655	Latimeria chalumnae	26.27	1.00e-28	118.00
IUUC-Lpe-051675	Leersia perrieri	27.08	2.00e-38	151.00
IUUC-Loc-052868	Lepisosteus oculatus	28.69	4.00e-42	163.00
IUUC-Lma-053258	Leptosphaeria maculans	26.45	1.00e-37	150.00
IUUC-Laf-053993	Loxodonta africana	29.25	2.00e-35	141.00
IUUC-Mcc-055128	Macaca mulatta	23.91	4.00e-16	77.00
IUUC-Meu-056501	Macropus eugenii	28.53	2.00e-26	111.00
IUUC-Mor-057114	Magnaporthe oryzae	28.12	3.00e-48	184.00
IUUC-Mpo-057463	Magnaporthe poae	30.19	1.00e-23	100.00
IUUC-Mtr-058367	Medicago truncatula	28.00	5.00e-33	133.00
IUUC-Mla-059107	Melampsora laricipopulina	60.63	2.00e-167	580.00
IUUC-Mga-059745	Meleagris gallopavo	30.34	3.00e-37	147.00
IUUC-Mvi-060362	Microbotryum violaceum	36.20	3.00e-76	277.00
IUUC-Mdo-062257	Monodelphis domestica	29.70	2.00e-39	155.00
IUUC-Mmu-063546	Mus musculus	28.78	5.00e-35	140.00
IUUC-Mac-065540	Musa acuminata	28.84	1.00e-42	165.00
IUUC-Mpu-066284	Mustela putorius furo	28.82	2.00e-34	138.00
IUUC-Mlu-067241	Myotis lucifugus	29.68	3.00e-35	140.00
IUUC-Nfi-068260	Neosartorya fischeri	27.91	9.00e-46	176.00
IUUC-Ncr-068719	Neurospora crassa	28.99	3.00e-44	171.00
IUUC-Nle-068981	Nomascus leucogenys	29.03	9.00e-32	129.00
IUUC-Opr-071218	Ochotona princeps	26.54	5.00e-30	123.00
IUUC-Ont-071646	Oreochromis niloticus	29.91	4.00e-41	160.00
IUUC-Oan-073453	Ornithorhynchus anatinus	28.39	7.00e-44	169.00
IUUC-Ocu-074008	Oryctolagus cuniculus	29.03	3.00e-35	140.00
IUUC-Oba-075712	Oryza barthii	25.46	6.00e-27	113.00
IUUC-Obr-076721	Oryza brachyantha	27.08	1.00e-37	149.00
IUUC-Ogl-077229	Oryza glaberrima	26.44	2.00e-36	145.00
IUUC-Ogu-078977	Oryza glumaepatula	25.54	2.00e-27	115.00
IUUC-Oin-079683	Oryza indica	26.44	1.00e-37	149.00
IUUC-Olo-080291	Oryza longistaminata	23.95	1.00e-22	98.20
IUUC-Ome-081834	Oryza meridionalis	26.65	1.00e-37	149.00
IUUC-Oni-082507	Oryza nivara	26.44	1.00e-33	135.00
IUUC-Opu-083396	Oryza punctata	26.65	5.00e-38	150.00
IUUC-Oru-085220	Oryza rufipogon	26.44	3.00e-33	134.00
IUUC-Osa-085767	Oryza sativa	26.44	1.00e-37	149.00
IUUC-Ola-087420	Oryzias latipes	29.46	3.00e-45	174.00
IUUC-Olu-087740	Ostreococcus lucimarinus	24.95	2.00e-23	101.00
IUUC-Oga-088264	Otolemur garnettii	28.82	1.00e-32	132.00
IUUC-Oar-089335	Ovis aries	28.39	5.00e-34	137.00
IUUC-Ptr-091320	Pan troglodytes	29.25	3.00e-33	134.00
IUUC-Pan-092833	Papio anubis	29.25	1.00e-33	135.00
IUUC-Psi-093504	Pelodiscus sinensis	30.26	3.00e-37	147.00
IUUC-Pma-094189	Petromyzon marinus	27.78	8.00e-35	139.00
IUUC-Pno-094929	Phaeosphaeria nodorum	27.05	3.00e-40	157.00
IUUC-Ppa-095429	Physcomitrella patens	27.25	5.00e-40	156.00
IUUC-Pfo-096337	Poecilia formosa	28.39	3.00e-46	177.00
IUUC-Pab-097571	Pongo abelii	29.68	1.00e-33	135.00
IUUC-Pop-099977	Populus trichocarpa	26.42	2.00e-33	135.00
IUUC-Pca-100394	Procavia capensis	27.31	3.00e-26	110.00
IUUC-Ppe-101848	Prunus persica	29.23	8.00e-42	162.00
IUUC-Pva-102921	Pteropus vampyrus	27.16	7.00e-14	70.10
IUUC-Ptt-103781	Puccinia triticina	90.76	0.00e+00	879.00
IUUC-Pte-104135	Pyrenophora teres	26.86	9.00e-37	147.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	25.97	3.00e-37	147.00
IUUC-Rno-105114	Rattus norvegicus	29.25	3.00e-35	140.00
IUUC-Sce-106401	Saccharomyces cerevisiae	27.23	5.00e-45	173.00
IUUC-Sha-107122	Sarcophilus harrisii	29.03	4.00e-36	144.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	30.72	6.00e-53	199.00
IUUC-Spo-108134	Schizosaccharomyces pombe	30.57	7.00e-46	176.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	27.51	9.00e-47	179.00
IUUC-Smo-108761	Selaginella moellendorffii	27.62	6.00e-36	143.00
IUUC-Sit-110354	Setaria italica	27.23	7.00e-40	156.00
IUUC-Sly-111178	Solanum lycopersicum	26.18	2.00e-36	144.00
IUUC-Stu-112778	Solanum tuberosum	26.68	4.00e-36	144.00
IUUC-Sar-113596	Sorex araneus	26.71	2.00e-18	85.10
IUUC-Sbi-114193	Sorghum bicolor	26.46	5.00e-38	150.00
IUUC-Sre-115002	Sporisorium reilianum	26.22	5.00e-47	180.00
IUUC-Ssc-116066	Sus scrofa	29.03	2.00e-34	138.00
IUUC-Tgu-117048	Taeniopygia guttata	31.28	1.00e-34	138.00
IUUC-Tni-119820	Tetraodon nigroviridis	29.68	6.00e-42	163.00
IUUC-Tca-121605	Theobroma cacao	28.33	2.00e-38	151.00
IUUC-Tre-121947	Trichoderma reesei	30.08	8.00e-47	179.00
IUUC-Tvi-122481	Trichoderma virens	30.20	2.00e-47	181.00
IUUC-Tae-123504	Triticum aestivum	27.23	2.00e-40	157.00
IUUC-Tur-126586	Triticum urartu	27.05	6.00e-37	146.00
IUUC-Tme-126900	Tuber melanosporum	28.31	6.00e-50	189.00
IUUC-Tbe-127736	Tupaia belangeri	23.12	2.00e-13	68.20
IUUC-Ttr-129041	Tursiops truncatus	33.01	6.00e-17	80.10
IUUC-Uma-129628	Ustilago maydis	27.45	2.00e-41	161.00
IUUC-Vpa-130260	Vicugna pacos	29.25	5.00e-35	140.00
IUUC-Vvi-131009	Vitis vinifera	28.93	2.00e-44	171.00
IUUC-Xtr-132083	Xenopus tropicalis	29.61	2.00e-40	157.00
IUUC-Xma-133094	Xiphophorus maculatus	29.03	2.00e-46	178.00
IUUC-Yli-134531	Yarrowia lipolytica	26.17	3.00e-33	134.00
IUUC-Zma-135509	Zea mays	27.39	1.00e-41	162.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence