iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Tae-123504

Ensembl Protein ID

TRIAE_CS42_2AS_TGACv1_114254_AA0365450.1

UniProt Accession

A0A096ULS1; A0A096ULS1_WHEAT

Protein Name

Ribosome biogenesis protein WDR12 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
TRIAE_CS42_2AS_TGACv1_114254_AA0365450	TRIAE_CS42_2AS_TGACv1_114254_AA0365450.1	TRIAE_CS42_2AS_TGACv1_114254_AA0365450.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	9.10e-34	116.6	272	307

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclafsd.tllvsGsdDgtikvWDlrtgvl 35
           gHt  v+++a+++ +++ s+s+D++++ WD  tg+ 
   Q: 272  GHTQCVSSVAWPEqRTIYSASWDHSVRQWDAQTGRE 307
           8**********88899**************999875 PP

Organism

Triticum aestivum

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MDADTSRQVR VRFVTKLPPP LRAPPTAIAV PAELSRMGLS EIVNSLLLSA EPDHQAQPFD 60
FIVDGELVRM PLHQFLLAKG ISAERVLELE YIKAVAPRKQ EPPLPHDDWV SAVDGSNPSF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTACCTTGCC TCCTGCGTCT CCGCCGGGTT CCCGTCGCTG CACTCGGGCC CCGCCAACTC 60
CAAAAACCCT AACCAAGCAA GCCCACCTTT CAGTCCCAAA ACCCTCCCCA CACCCTTCCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006455	Arabidopsis lyrata	63.51	2.00e-171	595.00
IUUC-Ath-006669	Arabidopsis thaliana	63.05	6.00e-166	577.00
IUUC-Afl-008617	Aspergillus flavus	31.60	4.00e-39	156.00
IUUC-Afu-008752	Aspergillus fumigatus	30.71	2.00e-38	154.00
IUUC-Ani-009136	Aspergillus nidulans	30.89	4.00e-41	163.00
IUUC-Ang-009701	Aspergillus niger	30.69	3.00e-37	150.00
IUUC-Aor-009884	Aspergillus oryzae	31.37	2.00e-39	157.00
IUUC-Bgr-012218	Blumeria graminis	27.80	3.00e-37	150.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	38.31	6.00e-64	238.00
IUUC-Dse-031308	Dothistroma septosporum	33.76	5.00e-51	195.00
IUUC-Fox-037965	Fusarium oxysporum	26.88	6.00e-33	135.00
IUUC-Gma-043967	Glycine max	64.50	1.00e-167	583.00
IUUC-Hvu-047331	Hordeum vulgare	97.49	0.00e+00	773.00
IUUC-Kpa-049304	Komagataella pastoris	28.11	1.00e-41	164.00
IUUC-Lpe-051675	Leersia perrieri	84.95	0.00e+00	761.00
IUUC-Mor-057114	Magnaporthe oryzae	29.48	2.00e-37	150.00
IUUC-Mtr-058367	Medicago truncatula	61.02	2.00e-154	539.00
IUUC-Mvi-060362	Microbotryum violaceum	27.00	5.00e-31	129.00
IUUC-Mac-065540	Musa acuminata	71.53	0.00e+00	635.00
IUUC-Oba-075712	Oryza barthii	73.32	3.00e-180	624.00
IUUC-Obr-076721	Oryza brachyantha	84.03	0.00e+00	755.00
IUUC-Ogl-077229	Oryza glaberrima	84.95	0.00e+00	761.00
IUUC-Ogu-078977	Oryza glumaepatula	73.78	0.00e+00	629.00
IUUC-Oin-079683	Oryza indica	84.95	0.00e+00	763.00
IUUC-Olo-080291	Oryza longistaminata	63.27	4.00e-128	451.00
IUUC-Ome-081834	Oryza meridionalis	86.21	0.00e+00	764.00
IUUC-Oni-082507	Oryza nivara	82.41	0.00e+00	727.00
IUUC-Opu-083396	Oryza punctata	84.49	0.00e+00	758.00
IUUC-Oru-085220	Oryza rufipogon	82.64	0.00e+00	728.00
IUUC-Osa-085767	Oryza sativa	84.95	0.00e+00	763.00
IUUC-Ppa-095429	Physcomitrella patens	52.10	1.00e-127	450.00
IUUC-Ppe-101848	Prunus persica	61.81	6.00e-165	574.00
IUUC-Pva-102921	Pteropus vampyrus	30.09	1.00e-22	101.00
IUUC-Pgr-103637	Puccinia graminis	26.81	6.00e-37	149.00
IUUC-Smo-108720	Selaginella moellendorffii	50.59	3.00e-122	432.00
IUUC-Sit-110354	Setaria italica	87.56	0.00e+00	797.00
IUUC-Sbi-114193	Sorghum bicolor	84.33	0.00e+00	725.00
IUUC-Tca-121605	Theobroma cacao	65.59	6.00e-172	597.00
IUUC-Tre-121947	Trichoderma reesei	27.05	6.00e-35	142.00
IUUC-Tvi-122481	Trichoderma virens	26.88	1.00e-34	141.00
IUUC-Tur-126586	Triticum urartu	99.75	0.00e+00	811.00
IUUC-Tme-126900	Tuber melanosporum	32.05	1.00e-53	204.00
IUUC-Uma-129628	Ustilago maydis	24.55	5.00e-09	56.60
IUUC-Vvi-131009	Vitis vinifera	67.82	1.00e-179	623.00
IUUC-Yli-134531	Yarrowia lipolytica	26.67	3.00e-31	130.00
IUUC-Zma-135509	Zea mays	83.41	0.00e+00	756.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence