iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007537

UUCD1 version

UUC-ArT-01218

Ensembl Protein ID

AT1G18760.1

UniProt Accession

Q9M9U7; Q9M9U7_ARATH

Genbank Protein ID

AAF27103.1; AAZ14054.1; AEE29760.1

Protein Name

At1g18760; F6A14.13 protein; Zinc finger, C3HC4 type (RING finger) family protein

Genbank Nucleotide ID

AC011809; DQ086850; CP002684

Gene Name

At1g18760; F6A14.13; F6A14_13

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT1G18760	AT1G18760.1	AT1G18760.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein Expression/Proteomics

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 activity/RING/RING	RING	16339806

Classification

Family	E-value	Score	Start	End
E3 activity/RING/U-box	4.30e-05	24.4	174	220
E3 activity/RING/RING	2.00e-07	32.3	175	216

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 7    lCpIslelMrdP...vvlpsGitydrssIekwlasggktcPvtrqplt 51
           +C+I le ++d    ++lp+G+ +d +++  w+++++  cP++r +l 
   Q: 174  RCTICLEEFNDGtkvMTLPCGHEFDDECVLTWFETNHD-CPLCRFKLP 220
           688888888775333799*******************9.****98886 PP

E3 activity/RING/RING

   S: 1    CaiCledfkdg..plvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C iCle+f dg  +++lpCgH f  +C+  w        ++  CPlCr
   Q: 175  CTICLEEFNDGtkVMTLPCGHEFDDECVLTW------FETNHDCPLCR 216
           ********77755778***************......777777****8 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MRIDFYHNII RNHQPENAGT LSVNANIDGY DYTFTDTSFI EEFLNEENNQ FPTKQKLHYF 60
LEDSELINDY DMEWGTAIFE LIFYVVAVTN PARGDYSPGD DLLVSLLIFP NDEPIEEEYE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAGAATAG ATTTCTACCA CAATATCATA CGCAATCATC AACCAGAAAA CGCTGGCACA 60
CTCTCAGTGA ATGCAAATAT CGACGGTTAC GACTACACAT TTACTGATAC ATCGTTTATC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR003903--UIM_dom
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50330--UIM
PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0008270--F:zinc ion binding

KEGG

ath:AT1G18760

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Acl-008221	Aspergillus clavatus	49.06	3.00e-11	63.50
IUUC-Afu-008769	Aspergillus fumigatus	47.17	7.00e-11	62.40
IUUC-Ang-009856	Aspergillus niger	47.17	6.00e-11	62.40
IUUC-Aor-010125	Aspergillus oryzae	52.63	3.00e-07	50.10
IUUC-Ate-010334	Aspergillus terreus	47.17	6.00e-11	62.40
IUUC-Bgr-012131	Blumeria graminis	35.23	1.00e-11	64.70
IUUC-Bol-015892	Brassica oleracea	43.59	2.00e-36	145.00
IUUC-Bra-017504	Brassica rapa	43.16	1.00e-41	162.00
IUUC-Ggr-039824	Gaeumannomyces graminis	46.30	1.00e-10	61.60
IUUC-Gma-044137	Glycine max	39.33	2.00e-13	67.40
IUUC-Mor-057005	Magnaporthe oryzae	48.15	5.00e-11	62.80
IUUC-Pop-099624	Populus trichocarpa	41.11	3.00e-17	80.90
IUUC-Ppe-101422	Prunus persica	41.76	2.00e-16	79.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence