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Basic Information Integrated Annotations

Tag Content
UUCD2 ID IUUC-Cel-018632
UUCD1 version UUC-CaE-00489
Ensembl Protein ID C36B1.5
UniProt Accession Q93339; Q93339_CAEEL
Genbank Protein ID CAB02270.1
Protein Name Yeast PRP (Splicing factor) related
Genbank Nucleotide ID BX284601
Gene Name prp-4; C36B1.5; CELE_C36B1.5
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
WBGene00007972 C36B1.5 C36B1.5
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
microRNAmiRNAMapRAID2
Protein-protein Interaction
IIDMentha
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 4.40e-35 118.5 378 410
UBD/Beta-Prp 1.20e-54 185.8 200 493
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlr 31
    gHt +++++++ ++ +++Gs D+++kvWDlr
   Q: 378 GHTKEIHSVEWmPNgYEMITGSSDNSMKVWDLR 410
    8***********776889*************97 PP
   


   UBD/Beta-Prp

   S: 6    kghhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgk........ilvtgseDrtikvwdlstgkcvhtlkghedsvl 98
    + +++ ++ fs d+++++t++++g++ vw+ ++ ++ gh+++ + +f+p + v++s D+t+ +w+ls+ +++ l++h ++v
   Q: 200 QVADTRPVAFCEFSADSEHIVTAGWSGSVAVWKREQCAQEIKFIGHSSQAGCARFHPGAFtqndysslNVVSCSYDGTVLLWSLSQESPIGELEQHPQRVS 300
    567788999999************************99999999*****888888887655566777789******************************* PP
   S: 99 slsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgs 199
    ++f+p+g++l+++ d+t r++dl t+++l ++gh+++v v++hpdg++ +G+ D r+Wd++tg+++ l g ht+ ++s+++ +ng e+++gs
   Q: 301 KVAFHPNGHHLATACFDSTWRMYDLTTKKELL-YQEGHSKSVADVAFHPDGSVALTGGHDCYGRVWDMRTGRCIMFLDG-HTKEIHSVEWMPNGYEMITGS 399
    ********************************.********************************************99.********************* PP
   S: 200 ldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlvlgsedskvniwkl 294
    d++ k+wdl+ + +t+ +ht+ v++vr++ +++lvs+s D ++++W ++ ++l++lq+h +++ +v+ s++++ +++ ++d ++++w++
   Q: 400 SDNSMKVWDLRMRRNTYTMPAHTSVVTRVRADAAGQYLVSASFDCTLKMWSTTGWQPLRQLQGHDTRILCVDI-SPDGQWMCSSAFDRTFKLWAQ 493
    ***********9999**********************************************************.*******************86 PP
   

Organism Caenorhabditis elegans
Protein Sequence
(Fasta)
MAENGNFAVP APPRQFGSLA NAESVNAILN AQQQNHGPTV SLERMEVSNQ ADSRHDAEMF 60
AEFDRRRRAR TLTLPTDDVQ VKLKLRALNQ PICLFGEDAL DRRERLRALL STMSEDEIAA 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Cel-018632|E3,WD_repeat;UBD,Beta-Prp|Caenorhabditis elegans
Please wait for a moment...
Nucleotide Sequence
(Fasta)
AGCACACAAA ATGGCTGAAA ATGGCAATTT TGCTGTTCCA GCACCGCCAA GACAGTTTGG 60
ATCACTGGCG AATGCAGAAA GCGTGAATGC AATCTTGGTA TGTTTTTTTT CATGAATTCT 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Cel-018632|E3,WD_repeat;UBD,Beta-Prp|Caenorhabditis elegans
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR014906--PRP4-like
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08799--PRP4
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00500--SFM
SM00320--WD40

Gene Ontology

GO:0046540--C:U4/U6 x U5 tri-snRNP complex
GO:0030621--F:U4 snRNA binding
GO:0017070--F:U6 snRNA binding
GO:0000398--P:mRNA splicing, via spliceosome

KEGG cel:CELE_C36B1.5
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000498 Aegilops tauschii 37.59 3.00e-71 261.00
IUUC-Aml-001737 Ailuropoda melanoleuca 44.00 6.00e-118 416.00
IUUC-Atr-002828 Amborella trichopoda 35.65 5.00e-86 310.00
IUUC-Apl-003723 Anas platyrhynchos 45.05 3.00e-119 420.00
IUUC-Aca-004972 Anolis carolinensis 46.59 2.00e-116 411.00
IUUC-Aly-006531 Arabidopsis lyrata 35.65 8.00e-70 256.00
IUUC-Ath-007367 Arabidopsis thaliana 35.27 4.00e-79 287.00
IUUC-Ago-007893 Ashbya gossypii 33.33 8.00e-49 186.00
IUUC-Acl-008236 Aspergillus clavatus 33.74 2.00e-73 268.00
IUUC-Afl-008522 Aspergillus flavus 36.63 3.00e-81 294.00
IUUC-Afu-008904 Aspergillus fumigatus 36.07 5.00e-78 283.00
IUUC-Ani-009198 Aspergillus nidulans 37.29 2.00e-82 298.00
IUUC-Ang-009662 Aspergillus niger 38.57 9.00e-81 292.00
IUUC-Aor-009881 Aspergillus oryzae 36.63 3.00e-81 294.00
IUUC-Ate-010333 Aspergillus terreus 35.76 4.00e-72 264.00
IUUC-Ame-011697 Astyanax mexicanus 45.25 1.00e-121 428.00
IUUC-Bgr-012254 Blumeria graminis 34.12 2.00e-79 288.00
IUUC-Bta-012615 Bos taurus 45.25 7.00e-118 416.00
IUUC-Bci-013720 Botrytis cinerea 35.27 8.00e-82 296.00
IUUC-Bdi-014302 Brachypodium distachyon 38.17 1.00e-84 305.00
IUUC-Bol-015594 Brassica oleracea 35.67 2.00e-72 265.00
IUUC-Bra-017465 Brassica rapa 35.67 2.00e-72 265.00
IUUC-Cja-019747 Callithrix jacchus 44.00 3.00e-118 417.00
IUUC-Cfa-020288 Canis familiaris 44.00 4.00e-118 417.00
IUUC-Cpo-021440 Cavia porcellus 45.45 2.00e-115 408.00
IUUC-Cre-022716 Chlamydomonas reinhardtii 39.33 6.00e-72 262.00
IUUC-Csa-023139 Chlorocebus sabaeus 45.73 1.00e-93 335.00
IUUC-Cho-024481 Choloepus hoffmanni 45.11 2.00e-113 401.00
IUUC-Cin-025106 Ciona intestinalis 42.80 4.00e-119 420.00
IUUC-Csv-026087 Ciona savignyi 41.56 8.00e-113 399.00
IUUC-Cgl-026538 Colletotrichum gloeosporioides 33.05 9.00e-79 287.00
IUUC-Cne-026793 Cryptococcus neoformans 34.77 2.00e-85 308.00
IUUC-Dre-028723 Danio rerio 47.48 3.00e-122 430.00
IUUC-Dno-029299 Dasypus novemcinctus 43.79 1.00e-117 415.00
IUUC-Dor-030345 Dipodomys ordii 35.59 5.00e-32 130.00
IUUC-Dse-031562 Dothistroma septosporum 35.82 2.00e-81 295.00
IUUC-Dme-031783 Drosophila melanogaster 44.80 6.00e-101 360.00
IUUC-Ete-032669 Echinops telfairi 44.09 2.00e-118 417.00
IUUC-Eca-033566 Equus caballus 44.00 5.00e-118 416.00
IUUC-Eeu-034524 Erinaceus europaeus 48.73 5.00e-72 263.00
IUUC-Fca-036215 Felis catus 44.00 5.00e-118 416.00
IUUC-Fal-037018 Ficedula albicollis 46.95 3.00e-101 360.00
IUUC-Fox-037936 Fusarium oxysporum 33.40 7.00e-77 280.00
IUUC-Fso-038366 Fusarium solani 35.39 4.00e-83 300.00
IUUC-Gmo-038966 Gadus morhua 41.53 2.00e-82 297.00
IUUC-Ggr-039942 Gaeumannomyces graminis 34.32 6.00e-72 263.00
IUUC-Gga-040797 Gallus gallus 44.63 7.00e-120 422.00
IUUC-Gac-042598 Gasterosteus aculeatus 41.89 9.00e-99 352.00
IUUC-Gma-044220 Glycine max 35.57 3.00e-73 268.00
IUUC-Ggo-044682 Gorilla gorilla 45.91 2.00e-117 414.00
IUUC-Hsa-045804 Homo sapiens 45.25 7.00e-118 416.00
IUUC-Hvu-047567 Hordeum vulgare 38.02 2.00e-73 268.00
IUUC-Itr-047882 Ictidomys tridecemlineatus 44.21 1.00e-118 418.00
IUUC-Kpa-049369 Komagataella pastoris 30.24 4.00e-55 207.00
IUUC-Lch-050074 Latimeria chalumnae 42.14 9.00e-105 372.00
IUUC-Lpe-051333 Leersia perrieri 36.92 7.00e-77 279.00
IUUC-Loc-052164 Lepisosteus oculatus 45.03 2.00e-122 431.00
IUUC-Lma-053088 Leptosphaeria maculans 36.16 8.00e-76 276.00
IUUC-Laf-053460 Loxodonta africana 44.00 4.00e-118 417.00
IUUC-Mcc-055859 Macaca mulatta 44.00 5.00e-118 416.00
IUUC-Meu-056134 Macropus eugenii 43.63 7.00e-118 416.00
IUUC-Mor-057251 Magnaporthe oryzae 35.38 5.00e-82 297.00
IUUC-Mpo-057375 Magnaporthe poae 38.71 5.00e-52 196.00
IUUC-Mtr-057656 Medicago truncatula 34.66 5.00e-68 250.00
IUUC-Mla-059145 Melampsora laricipopulina 38.16 4.00e-87 313.00
IUUC-Mga-059855 Meleagris gallopavo 44.42 2.00e-119 421.00
IUUC-Mvi-060372 Microbotryum violaceum 34.77 1.00e-72 265.00
IUUC-Mmr-060826 Microcebus murinus 44.21 2.00e-118 418.00
IUUC-Mdo-062119 Monodelphis domestica 43.84 4.00e-118 417.00
IUUC-Mmu-063351 Mus musculus 44.00 3.00e-118 417.00
IUUC-Mac-064846 Musa acuminata 36.11 3.00e-72 264.00
IUUC-Mpu-066006 Mustela putorius furo 44.00 5.00e-118 416.00
IUUC-Mlu-067398 Myotis lucifugus 44.00 1.00e-117 415.00
IUUC-Nfi-068399 Neosartorya fischeri 36.27 2.00e-83 301.00
IUUC-Ncr-068711 Neurospora crassa 35.03 9.00e-80 289.00
IUUC-Nle-069982 Nomascus leucogenys 44.00 3.00e-118 417.00
IUUC-Opr-070596 Ochotona princeps 44.00 3.00e-118 417.00
IUUC-Ont-072374 Oreochromis niloticus 45.37 8.00e-111 392.00
IUUC-Oan-073166 Ornithorhynchus anatinus 44.85 2.00e-104 371.00
IUUC-Ocu-074371 Oryctolagus cuniculus 44.00 5.00e-118 416.00
IUUC-Oba-075083 Oryza barthii 37.53 1.00e-78 285.00
IUUC-Obr-076405 Oryza brachyantha 37.15 2.00e-77 281.00
IUUC-Ogl-077683 Oryza glaberrima 37.53 2.00e-78 285.00
IUUC-Ogu-078486 Oryza glumaepatula 37.76 2.00e-78 285.00
IUUC-Oin-079679 Oryza indica 37.53 2.00e-81 295.00
IUUC-Olo-080243 Oryza longistaminata 37.41 3.00e-70 257.00
IUUC-Ome-081230 Oryza meridionalis 37.53 3.00e-81 294.00
IUUC-Oni-082961 Oryza nivara 37.53 2.00e-81 295.00
IUUC-Opu-083189 Oryza punctata 37.30 4.00e-77 280.00
IUUC-Oru-084353 Oryza rufipogon 37.53 2.00e-81 294.00
IUUC-Osa-085458 Oryza sativa 37.53 3.00e-81 294.00
IUUC-Ola-086940 Oryzias latipes 45.47 2.00e-114 404.00
IUUC-Olu-087580 Ostreococcus lucimarinus 33.69 2.00e-51 195.00
IUUC-Oga-088703 Otolemur garnettii 43.04 5.00e-110 390.00
IUUC-Oar-089829 Ovis aries 45.25 7.00e-118 416.00
IUUC-Ptr-090838 Pan troglodytes 45.25 7.00e-118 416.00
IUUC-Pan-092261 Papio anubis 43.91 8.00e-117 412.00
IUUC-Psi-093020 Pelodiscus sinensis 44.84 2.00e-120 424.00
IUUC-Pno-094858 Phaeosphaeria nodorum 34.97 1.00e-72 265.00
IUUC-Ppa-095531 Physcomitrella patens 37.61 8.00e-87 313.00
IUUC-Pfo-096812 Poecilia formosa 41.18 1.00e-92 332.00
IUUC-Pab-097805 Pongo abelii 43.56 7.00e-97 346.00
IUUC-Pop-100051 Populus trichocarpa 36.20 8.00e-72 263.00
IUUC-Pca-100152 Procavia capensis 44.00 9.00e-118 416.00
IUUC-Ppe-101244 Prunus persica 34.56 3.00e-76 277.00
IUUC-Pva-102529 Pteropus vampyrus 42.32 2.00e-109 387.00
IUUC-Pgr-103550 Puccinia graminis 33.52 3.00e-87 314.00
IUUC-Ptt-103951 Puccinia triticina 34.52 6.00e-65 240.00
IUUC-Pte-104151 Pyrenophora teres 34.64 9.00e-70 256.00
IUUC-Pyt-104571 Pyrenophora triticirepentis 34.57 6.00e-71 260.00
IUUC-Rno-105747 Rattus norvegicus 44.00 4.00e-118 417.00
IUUC-Sce-106418 Saccharomyces cerevisiae 31.24 2.00e-62 231.00
IUUC-Sha-107334 Sarcophilus harrisii 43.63 5.00e-118 416.00
IUUC-Sja-107794 Schizosaccharomyces japonicus 36.61 1.00e-73 268.00
IUUC-Spo-108189 Schizosaccharomyces pombe 37.56 5.00e-81 293.00
IUUC-Ssl-108550 Sclerotinia sclerotiorum 35.05 4.00e-81 293.00
IUUC-Smo-108924 Selaginella moellendorffii 35.70 3.00e-80 291.00
IUUC-Sit-110102 Setaria italica 36.89 2.00e-78 285.00
IUUC-Sly-111668 Solanum lycopersicum 36.18 1.00e-76 278.00
IUUC-Stu-111928 Solanum tuberosum 36.18 9.00e-77 279.00
IUUC-Sar-113266 Sorex araneus 38.95 7.00e-99 353.00
IUUC-Sbi-114134 Sorghum bicolor 37.35 4.00e-79 287.00
IUUC-Sre-115114 Sporisorium reilianum 37.74 2.00e-87 315.00
IUUC-Ssc-115443 Sus scrofa 44.00 6.00e-118 416.00
IUUC-Tgu-117157 Taeniopygia guttata 45.05 5.00e-119 419.00
IUUC-Tru-118587 Takifugu rubripes 46.24 2.00e-118 417.00
IUUC-Tsy-119157 Tarsius syrichta 44.44 2.00e-103 367.00
IUUC-Tni-120427 Tetraodon nigroviridis 46.08 9.00e-120 422.00
IUUC-Tca-121368 Theobroma cacao 34.29 2.00e-79 288.00
IUUC-Tre-122074 Trichoderma reesei 33.86 1.00e-83 302.00
IUUC-Tvi-122349 Trichoderma virens 34.50 1.00e-83 302.00
IUUC-Tae-123589 Triticum aestivum 37.93 9.00e-72 263.00
IUUC-Tur-125983 Triticum urartu 40.27 2.00e-65 241.00
IUUC-Tme-126951 Tuber melanosporum 36.52 1.00e-81 295.00
IUUC-Tbe-128136 Tupaia belangeri 40.42 4.00e-102 363.00
IUUC-Ttr-129169 Tursiops truncatus 40.80 1.00e-61 229.00
IUUC-Uma-129399 Ustilago maydis 38.24 1.00e-86 312.00
IUUC-Vda-129842 Verticillium dahliae 35.90 4.00e-85 307.00
IUUC-Vpa-130440 Vicugna pacos 44.00 3.00e-118 417.00
IUUC-Vvi-131075 Vitis vinifera 36.32 1.00e-75 276.00
IUUC-Xtr-132713 Xenopus tropicalis 27.32 5.00e-34 137.00
IUUC-Xma-133002 Xiphophorus maculatus 46.48 4.00e-99 353.00
IUUC-Yli-134569 Yarrowia lipolytica 33.26 6.00e-68 250.00
IUUC-Zma-135799 Zea mays 35.09 4.00e-76 277.00
Created Date 25-Jun-2017

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