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Tag Content
UUCD2 ID IUUC-Pop-099593
UUCD1 version UUC-PoT-00980
Ensembl Protein ID POPTR_0001s36830.1
UniProt Accession B9GJF7; B9GJF7_POPTR
Genbank Protein ID EEE85139.1
Protein Name DAMAGED DNA BINDING protein 1 B
Genbank Nucleotide ID CM000337
Gene Name POPTRDRAFT_753194; POPTR_0001s36830g
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
POPTR_0001s36830 POPTR_0001s36830.1 POPTR_0001s36830.1
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DDB1 0 1655.2 733 1088
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DDB1
   S: 781  lelseleenevnfllvlDkntfelllaqdlrewEtavsllSqklkdDseeyyvvktalvlpeenelkkgrilvfsvedslklkLltvae 869
           ++ s++ee+e++f+++lD++tfe++++++l+ +E+++s+lS+++ dDs++yy+v+ta+vlpeene++kgrilvf+ved+   kL+ +ae
   Q: 733  KNQSNAEESEMHFIRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDG---KLQLIAE 818
           68899**************************************************************************...******* PP
   S: 870  kkvkgavidlvklNgkllaainseirlyewkvmgtdekelrkeCernntilaLtlktrkdfivVgDlmrsvtLllykdlegsfeEsard 958
           k++kgav++l+++Ngkllaain++i+ly+w++++++++el++eC+++++ilaL+++tr+dfivVgDlm+s++Ll+yk++eg++eE+ard
   Q: 819  KETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARD 907
           ***************************************************************************************** PP
   S: 959  ynlewmsaveilnddiflgaencgNlfvvkkdikagltdeerslleevgefrlgefvevfrfgtlvlqdvgerevnrssevifgtenge 1047
           yn++wmsaveil+ddi+lgaen++Nlf+v+k+ ++g+tdeer +le+vge++lgefv++fr+g+lv++ + +++v+++++vifgt+ng+
   Q: 908  YNANWMSAVEILDDDIYLGAENNFNLFTVRKN-SEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLP-DSDVGQIPTVIFGTVNGV 994
           ********************************.***********************************98.****************** PP
   S: 1048 igvilrlrrellkflrnlestlkkvikrvakieHssyRsFetekrterasgfvdgdLiesilDlsrdkavdilkvlyekrwnskkevsv 1136
           igvi++l++e+++fl++l+s+l+kvik+v++++H+++RsF++ek+t  a++f+dgdLies+lDlsr+++ +i+k +         e+sv
   Q: 995  IGVIASLPHEQYLFLEKLQSNLRKVIKGVGGLSHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRSRMDEISKAM---------EISV 1074
           ****************************************************************************.........9*** PP
   S: 1137 eeivKlveelkrlh 1150
           ee++K+veel+rlh
   Q: 1075 EELCKRVEELTRLH 1088
           ************98 PP
   
Organism Populus trichocarpa
Protein Sequence
(Fasta)
MSVWNYVVTA HKPTNVTHSC VGNFTSSQEL NLIIAKCTRI EINLLTPQGL QPMLDVPIYG 60
RIATLELFRP HGEAQDFLFI ATERYKFCVL QWDAETSELI TRAMGDVSDR IGRPTDNGQI 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Pop-099593|E3,DDB1|Populus trichocarpa
Please wait for a moment...
Nucleotide Sequence
(Fasta)
GGAACAGCAA ACACACTAGA GAGAGCAGGA GCCGCTAGGG CTCTTTCATT TCCTTCGAGC 60
AAAACACAGA CGCGCAGAGA AAGAGAGGGG GAGATCTGAA AGTGAAGATG AGTGTATGGA 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Pop-099593|E3,DDB1|Populus trichocarpa
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
Interpro

IPR004871--Cleavage/polyA-sp_fac_asu_C
IPR031297--DDB1
IPR015943--WD40/YVTN_repeat-like_dom
IPR017986--WD40_repeat_dom
Pfam

PF03178--CPSF_A
Gene Ontology

GO:0031461--C:cullin-RING ubiquitin ligase complex
GO:0005634--C:nucleus
GO:0003684--F:damaged DNA binding
GO:0006289--P:nucleotide-excision repair
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
KEGG pop:POPTR_0001s36830g
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000120 Aegilops tauschii 78.75 0.00e+00 1830.00
IUUC-Aml-002096 Ailuropoda melanoleuca 52.75 0.00e+00 1179.00
IUUC-Atr-002742 Amborella trichopoda 87.05 0.00e+00 1942.00
IUUC-Apl-003624 Anas platyrhynchos 52.34 0.00e+00 1138.00
IUUC-Aca-005085 Anolis carolinensis 52.80 0.00e+00 1174.00
IUUC-Aly-005857 Arabidopsis lyrata 91.36 0.00e+00 2068.00
IUUC-Ath-006658 Arabidopsis thaliana 90.81 0.00e+00 2060.00
IUUC-Acl-008149 Aspergillus clavatus 29.94 2.00e-120 426.00
IUUC-Afl-008549 Aspergillus flavus 29.89 1.00e-119 424.00
IUUC-Afu-009076 Aspergillus fumigatus 30.46 3.00e-130 459.00
IUUC-Ani-009302 Aspergillus nidulans 28.66 1.00e-107 384.00
IUUC-Ang-009636 Aspergillus niger 28.63 1.00e-103 370.00
IUUC-Aor-010073 Aspergillus oryzae 30.06 3.00e-126 446.00
IUUC-Ate-010422 Aspergillus terreus 29.45 2.00e-123 436.00
IUUC-Ame-011643 Astyanax mexicanus 47.15 0.00e+00 988.00
IUUC-Bgr-012164 Blumeria graminis 29.32 4.00e-118 419.00
IUUC-Bta-012494 Bos taurus 52.75 0.00e+00 1177.00
IUUC-Bci-013957 Botrytis cinerea 29.00 5.00e-113 402.00
IUUC-Bdi-014186 Brachypodium distachyon 82.29 0.00e+00 1847.00
IUUC-Bol-015922 Brassica oleracea 90.53 0.00e+00 2047.00
IUUC-Bra-017300 Brassica rapa 90.35 0.00e+00 2038.00
IUUC-Cel-018239 Caenorhabditis elegans 33.66 8.00e-179 620.00
IUUC-Cja-019165 Callithrix jacchus 52.66 0.00e+00 1176.00
IUUC-Cfa-020406 Canis familiaris 52.75 0.00e+00 1179.00
IUUC-Cpo-022154 Cavia porcellus 52.75 0.00e+00 1176.00
IUUC-Cre-022557 Chlamydomonas reinhardtii 49.21 0.00e+00 995.00
IUUC-Csa-024061 Chlorocebus sabaeus 52.66 0.00e+00 1176.00
IUUC-Cho-024554 Choloepus hoffmanni 48.39 4.00e-135 475.00
IUUC-Cin-025466 Ciona intestinalis 49.31 0.00e+00 1067.00
IUUC-Csv-026370 Ciona savignyi 47.99 0.00e+00 949.00
IUUC-Cgl-026595 Colletotrichum gloeosporioides 28.40 2.00e-117 417.00
IUUC-Cme-027342 Cyanidioschyzon merolae 30.35 3.00e-136 479.00
IUUC-Dre-027448 Danio rerio 52.32 4.00e-163 567.00
IUUC-Dno-029794 Dasypus novemcinctus 53.06 0.00e+00 1121.00
IUUC-Dor-030789 Dipodomys ordii 46.85 3.00e-120 426.00
IUUC-Dse-031491 Dothistroma septosporum 30.03 2.00e-127 450.00
IUUC-Dme-031940 Drosophila melanogaster 46.65 0.00e+00 979.00
IUUC-Ete-032913 Echinops telfairi 51.63 2.00e-111 396.00
IUUC-Eca-033777 Equus caballus 52.49 0.00e+00 1170.00
IUUC-Eeu-034900 Erinaceus europaeus 50.67 1.00e-165 577.00
IUUC-Fca-035869 Felis catus 52.75 0.00e+00 1179.00
IUUC-Fal-036777 Ficedula albicollis 52.61 0.00e+00 1165.00
IUUC-Fox-037954 Fusarium oxysporum 28.35 2.00e-118 419.00
IUUC-Fso-038292 Fusarium solani 27.83 1.00e-117 417.00
IUUC-Gmo-038815 Gadus morhua 47.77 9.00e-153 533.00
IUUC-Ggr-039907 Gaeumannomyces graminis 27.05 1.00e-112 400.00
IUUC-Gga-040995 Gallus gallus 52.75 0.00e+00 1175.00
IUUC-Gac-042390 Gasterosteus aculeatus 52.37 0.00e+00 1103.00
IUUC-Gma-042904 Glycine max 92.93 0.00e+00 2020.00
IUUC-Ggo-044891 Gorilla gorilla 52.53 0.00e+00 1173.00
IUUC-Hsa-046709 Homo sapiens 52.66 0.00e+00 1176.00
IUUC-Hvu-047504 Hordeum vulgare 82.39 0.00e+00 1858.00
IUUC-Itr-048678 Ictidomys tridecemlineatus 52.75 0.00e+00 1179.00
IUUC-Lch-050565 Latimeria chalumnae 52.66 0.00e+00 1174.00
IUUC-Lpe-051260 Leersia perrieri 83.67 0.00e+00 1867.00
IUUC-Loc-052091 Lepisosteus oculatus 47.95 0.00e+00 791.00
IUUC-Lma-053246 Leptosphaeria maculans 28.99 1.00e-123 437.00
IUUC-Laf-053502 Loxodonta africana 52.66 0.00e+00 1177.00
IUUC-Mcc-054802 Macaca mulatta 53.28 0.00e+00 1166.00
IUUC-Meu-056808 Macropus eugenii 53.95 0.00e+00 773.00
IUUC-Mor-057253 Magnaporthe oryzae 27.78 5.00e-106 379.00
IUUC-Mpo-057562 Magnaporthe poae 26.86 5.00e-109 389.00
IUUC-Mtr-057743 Medicago truncatula 91.37 0.00e+00 2027.00
IUUC-Mla-059154 Melampsora laricipopulina 27.00 1.00e-93 338.00
IUUC-Mga-059824 Meleagris gallopavo 52.36 0.00e+00 1092.00
IUUC-Mvi-060279 Microbotryum violaceum 28.76 1.00e-122 433.00
IUUC-Mmr-061215 Microcebus murinus 52.40 0.00e+00 1166.00
IUUC-Mdo-062028 Monodelphis domestica 50.41 0.00e+00 934.00
IUUC-Mmu-064327 Mus musculus 52.75 0.00e+00 1178.00
IUUC-Mac-065445 Musa acuminata 88.43 0.00e+00 1956.00
IUUC-Mpu-065814 Mustela putorius furo 50.83 0.00e+00 1115.00
IUUC-Mlu-067136 Myotis lucifugus 52.66 0.00e+00 1170.00
IUUC-Nfi-068355 Neosartorya fischeri 30.46 4.00e-125 442.00
IUUC-Ncr-068620 Neurospora crassa 29.46 3.00e-121 429.00
IUUC-Nle-069566 Nomascus leucogenys 53.19 0.00e+00 1157.00
IUUC-Opr-070915 Ochotona princeps 51.48 0.00e+00 875.00
IUUC-Ont-071753 Oreochromis niloticus 52.84 0.00e+00 1171.00
IUUC-Oan-073187 Ornithorhynchus anatinus 52.89 0.00e+00 1068.00
IUUC-Ocu-074619 Oryctolagus cuniculus 52.75 0.00e+00 1179.00
IUUC-Oba-075091 Oryza barthii 80.55 0.00e+00 1259.00
IUUC-Obr-076425 Oryza brachyantha 83.24 0.00e+00 1862.00
IUUC-Ogu-078794 Oryza glumaepatula 83.49 0.00e+00 1870.00
IUUC-Oin-079725 Oryza indica 82.28 0.00e+00 1834.00
IUUC-Olo-080842 Oryza longistaminata 80.48 0.00e+00 1689.00
IUUC-Ome-081818 Oryza meridionalis 83.39 0.00e+00 1864.00
IUUC-Oni-082879 Oryza nivara 82.94 0.00e+00 1848.00
IUUC-Opu-083361 Oryza punctata 82.62 0.00e+00 1861.00
IUUC-Oru-084781 Oryza rufipogon 83.49 0.00e+00 1869.00
IUUC-Osa-086293 Oryza sativa 83.49 0.00e+00 1869.00
IUUC-Ola-086881 Oryzias latipes 52.48 0.00e+00 1160.00
IUUC-Olu-087674 Ostreococcus lucimarinus 55.83 0.00e+00 1172.00
IUUC-Oga-089056 Otolemur garnettii 52.66 0.00e+00 1177.00
IUUC-Oar-089457 Ovis aries 53.37 0.00e+00 1166.00
IUUC-Ptr-091179 Pan troglodytes 52.62 0.00e+00 1157.00
IUUC-Pan-092019 Papio anubis 52.43 0.00e+00 1169.00
IUUC-Psi-093407 Pelodiscus sinensis 52.52 0.00e+00 1149.00
IUUC-Pma-094272 Petromyzon marinus 52.78 0.00e+00 1067.00
IUUC-Pno-094864 Phaeosphaeria nodorum 29.65 1.00e-129 457.00
IUUC-Ppa-095885 Physcomitrella patens 80.73 0.00e+00 1759.00
IUUC-Pfo-096083 Poecilia formosa 52.97 0.00e+00 1172.00
IUUC-Pab-098652 Pongo abelii 50.91 0.00e+00 1077.00
IUUC-Pca-100189 Procavia capensis 51.70 0.00e+00 668.00
IUUC-Ppe-101987 Prunus persica 92.93 0.00e+00 1984.00
IUUC-Pva-102605 Pteropus vampyrus 52.58 0.00e+00 1172.00
IUUC-Pgr-103659 Puccinia graminis 25.39 5.00e-70 259.00
IUUC-Ptt-103884 Puccinia triticina 23.26 1.00e-58 221.00
IUUC-Pte-104233 Pyrenophora teres 30.25 6.00e-132 464.00
IUUC-Pyt-104454 Pyrenophora triticirepentis 30.31 3.00e-128 452.00
IUUC-Rno-106004 Rattus norvegicus 52.84 0.00e+00 1179.00
IUUC-Sha-106726 Sarcophilus harrisii 51.35 0.00e+00 1052.00
IUUC-Sja-107864 Schizosaccharomyces japonicus 25.75 1.00e-89 324.00
IUUC-Spo-108029 Schizosaccharomyces pombe 27.46 1.00e-118 420.00
IUUC-Ssl-108441 Sclerotinia sclerotiorum 27.34 5.00e-105 375.00
IUUC-Smo-108808 Selaginella moellendorffii 80.00 0.00e+00 1829.00
IUUC-Sit-109735 Setaria italica 83.24 0.00e+00 1867.00
IUUC-Sly-111520 Solanum lycopersicum 91.05 0.00e+00 2016.00
IUUC-Sar-113606 Sorex araneus 52.89 6.00e-64 239.00
IUUC-Sbi-114539 Sorghum bicolor 80.78 0.00e+00 1838.00
IUUC-Sre-114936 Sporisorium reilianum 24.22 6.00e-66 246.00
IUUC-Ssc-116038 Sus scrofa 52.75 0.00e+00 1177.00
IUUC-Tgu-117512 Taeniopygia guttata 52.58 0.00e+00 1166.00
IUUC-Tru-117593 Takifugu rubripes 52.18 0.00e+00 1153.00
IUUC-Tsy-119513 Tarsius syrichta 50.88 2.00e-174 606.00
IUUC-Tni-120551 Tetraodon nigroviridis 48.76 0.00e+00 909.00
IUUC-Tca-121505 Theobroma cacao 95.22 0.00e+00 2051.00
IUUC-Tre-122136 Trichoderma reesei 27.90 6.00e-114 405.00
IUUC-Tvi-122512 Trichoderma virens 28.08 3.00e-122 432.00
IUUC-Tae-124186 Triticum aestivum 82.20 0.00e+00 1856.00
IUUC-Tur-126451 Triticum urartu 81.62 0.00e+00 1658.00
IUUC-Tme-127057 Tuber melanosporum 31.03 6.00e-127 448.00
IUUC-Ttr-128891 Tursiops truncatus 51.04 0.00e+00 739.00
IUUC-Uma-129583 Ustilago maydis 26.58 1.00e-66 248.00
IUUC-Vda-129870 Verticillium dahliae 26.23 4.00e-105 375.00
IUUC-Vpa-130117 Vicugna pacos 49.46 0.00e+00 877.00
IUUC-Vvi-131033 Vitis vinifera 94.58 0.00e+00 2087.00
IUUC-Xtr-131987 Xenopus tropicalis 52.31 0.00e+00 1150.00
IUUC-Xma-134117 Xiphophorus maculatus 52.05 0.00e+00 1138.00
IUUC-Zma-134758 Zea mays 83.38 0.00e+00 1873.00
Created Date 25-Jun-2017

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