iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Vvi-131033

UUCD1 version

UUC-ViV-00746

Ensembl Protein ID

VIT_10s0003g04360.t01

UniProt Accession

F6HLW1; F6HLW1_VITVI

Genbank Protein ID

CCB55836.1

Protein Name

Putative uncharacterized protein

Genbank Nucleotide ID

FN595992

Gene Name

VIT_10s0003g04360

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
VIT_10s0003g04360	VIT_10s0003g04360.t01	VIT_10s0003g04360.t01

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DDB1	0	1655.3	734	1089

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DDB1

   S: 781  lelseleenevnfllvlDkntfelllaqdlrewEtavsllSqklkdDseeyyvvktalvlpeenelkkgrilvfsvedslklkLlt 866
            + s++e++e++f+++lD++tfe++++++l+ +E+++s+lS+++ dDs++yy+v+ta+vlpeene++kgrilvf+ved+   kL+ 
   Q: 734  YNQSSTEDSEMHFIRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILVFIVEDG---KLQL 816
           5778999************************************************************************...**** PP
   S: 867  vaekkvkgavidlvklNgkllaainseirlyewkvmgtdekelrkeCernntilaLtlktrkdfivVgDlmrsvtLllykdlegsf 952
           +aek++kgav++l+++Ngkllaain++i+ly+w++++++++el++e +++++ilaL+++tr+dfivVgDlm+s++Ll+yk++eg++
   Q: 817  IAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSESGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAI 902
           ************************************************************************************** PP
   S: 953  eEsardynlewmsaveilnddiflgaencgNlfvvkkdikagltdeerslleevgefrlgefvevfrfgtlvlqdvgerevnrsse 1038
           eE+ardyn++wmsaveil+ddi+lgaen++N+f+v+k+ ++g+tdeer +le+vge++lgefv++fr+g+lv++ + +++v+++++
   Q: 903  EERARDYNANWMSAVEILDDDIYLGAENNFNIFTVRKN-SEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLP-DSDVGQIPT 986
           **************************************.***********************************98.********* PP
   S: 1039 vifgtengeigvilrlrrellkflrnlestlkkvikrvakieHssyRsFetekrterasgfvdgdLiesilDlsrdkavdilkvly 1124
           vifgt+ng+igvi++l+++++ fl++l+ +l+kvik+v++++H+++RsF++ek+t  a++f+dgdLie +lDl+r ++ +i+k + 
   Q: 987  VIFGTVNGVIGVIASLPHDQYVFLEKLQANLRKVIKGVGGLSHEQWRSFNNEKKTVDAKNFLDGDLIETFLDLNRTRMDEISKAM- 1071
           *************************************************************************************. PP
   S: 1125 ekrwnskkevsveeivKlveelkrlh 1150
                    vsvee++K+veel+rlh
   Q: 1072 --------AVSVEELCKRVEELTRLH 1089
           ........9***************98 PP

Organism

Vitis vinifera

Protein Sequence
(Fasta)

MSVWNYVVTA HKPTNVTHSC VGNFTGPQEL NLIIAKCTRI EIHLLTPQGL QPMLDVPIYG 60
RIATLELFRP HGEAQDFLFI ATERYKFCVL QWDAENSEVI TRAMGDVSDR IGRPTDNGQI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGGGTTAGGG TTAGGGTTAG GTTTACGTTT TCACCTGAGG AACAGATATC CAGCTCATCG 60
CAGAGCTCAG AGAGATTGAG AAAATGAGCG TGTGGAATTA TGTTGTTACG GCTCACAAGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR004871--Cleavage/polyA-sp_fac_asu_C
IPR031297--DDB1
IPR015943--WD40/YVTN_repeat-like_dom
IPR017986--WD40_repeat_dom

Pfam

PF03178--CPSF_A

Gene Ontology

GO:0031461--C:cullin-RING ubiquitin ligase complex
GO:0005634--C:nucleus
GO:0003684--F:damaged DNA binding
GO:0006289--P:nucleotide-excision repair
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

vvi:100256664

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000120	Aegilops tauschii	79.81	0.00e+00	1862.00
IUUC-Aml-002096	Ailuropoda melanoleuca	51.88	0.00e+00	1174.00
IUUC-Atr-002742	Amborella trichopoda	87.97	0.00e+00	1962.00
IUUC-Apl-003624	Anas platyrhynchos	51.37	0.00e+00	1133.00
IUUC-Aca-005085	Anolis carolinensis	52.14	0.00e+00	1169.00
IUUC-Aly-005857	Arabidopsis lyrata	90.73	0.00e+00	2056.00
IUUC-Ath-006658	Arabidopsis thaliana	90.45	0.00e+00	2053.00
IUUC-Acl-008149	Aspergillus clavatus	30.14	5.00e-124	438.00
IUUC-Afl-008549	Aspergillus flavus	30.17	4.00e-121	428.00
IUUC-Afu-009076	Aspergillus fumigatus	31.21	3.00e-134	472.00
IUUC-Ani-009302	Aspergillus nidulans	29.00	2.00e-109	390.00
IUUC-Ang-009636	Aspergillus niger	28.68	3.00e-105	375.00
IUUC-Aor-010073	Aspergillus oryzae	30.42	1.00e-128	454.00
IUUC-Ate-010422	Aspergillus terreus	29.51	2.00e-124	439.00
IUUC-Ame-011643	Astyanax mexicanus	46.46	0.00e+00	983.00
IUUC-Bgr-012164	Blumeria graminis	28.85	1.00e-119	423.00
IUUC-Bta-012494	Bos taurus	51.88	0.00e+00	1174.00
IUUC-Bci-013957	Botrytis cinerea	29.40	4.00e-117	415.00
IUUC-Bdi-014186	Brachypodium distachyon	82.94	0.00e+00	1868.00
IUUC-Bol-015922	Brassica oleracea	89.90	0.00e+00	2036.00
IUUC-Bra-017300	Brassica rapa	89.72	0.00e+00	2029.00
IUUC-Cel-018239	Caenorhabditis elegans	33.39	3.00e-175	608.00
IUUC-Cja-019165	Callithrix jacchus	51.79	0.00e+00	1172.00
IUUC-Cfa-020406	Canis familiaris	51.88	0.00e+00	1174.00
IUUC-Cpo-022154	Cavia porcellus	51.88	0.00e+00	1172.00
IUUC-Cre-022557	Chlamydomonas reinhardtii	49.43	0.00e+00	996.00
IUUC-Csa-024061	Chlorocebus sabaeus	51.79	0.00e+00	1172.00
IUUC-Cho-024554	Choloepus hoffmanni	47.82	3.00e-133	468.00
IUUC-Cin-025466	Ciona intestinalis	49.39	0.00e+00	1071.00
IUUC-Csv-026370	Ciona savignyi	48.31	0.00e+00	958.00
IUUC-Cgl-026595	Colletotrichum gloeosporioides	28.10	3.00e-116	412.00
IUUC-Cme-027342	Cyanidioschyzon merolae	29.95	4.00e-136	478.00
IUUC-Dre-027448	Danio rerio	51.61	5.00e-161	560.00
IUUC-Dno-029794	Dasypus novemcinctus	52.41	0.00e+00	1120.00
IUUC-Dor-030789	Dipodomys ordii	45.91	4.00e-120	425.00
IUUC-Dse-031491	Dothistroma septosporum	29.34	2.00e-126	446.00
IUUC-Dme-031940	Drosophila melanogaster	46.56	0.00e+00	983.00
IUUC-Ete-032913	Echinops telfairi	54.51	8.00e-81	295.00
IUUC-Eca-033777	Equus caballus	51.62	0.00e+00	1165.00
IUUC-Eeu-034900	Erinaceus europaeus	49.83	2.00e-165	575.00
IUUC-Fca-035869	Felis catus	51.88	0.00e+00	1174.00
IUUC-Fal-036777	Ficedula albicollis	51.78	0.00e+00	1161.00
IUUC-Fox-037954	Fusarium oxysporum	27.58	1.00e-118	420.00
IUUC-Fso-038292	Fusarium solani	27.53	2.00e-117	416.00
IUUC-Gmo-038815	Gadus morhua	47.27	7.00e-152	530.00
IUUC-Ggr-039907	Gaeumannomyces graminis	26.56	4.00e-116	412.00
IUUC-Gga-040995	Gallus gallus	51.88	0.00e+00	1172.00
IUUC-Gac-042390	Gasterosteus aculeatus	51.82	0.00e+00	1100.00
IUUC-Gma-042904	Glycine max	93.76	0.00e+00	2042.00
IUUC-Ggo-044891	Gorilla gorilla	51.66	0.00e+00	1168.00
IUUC-Hsa-046709	Homo sapiens	51.79	0.00e+00	1172.00
IUUC-Hvu-047504	Hordeum vulgare	83.39	0.00e+00	1889.00
IUUC-Itr-048678	Ictidomys tridecemlineatus	51.97	0.00e+00	1175.00
IUUC-Lch-050565	Latimeria chalumnae	51.87	0.00e+00	1167.00
IUUC-Lpe-051260	Leersia perrieri	84.13	0.00e+00	1887.00
IUUC-Loc-052091	Lepisosteus oculatus	47.20	0.00e+00	781.00
IUUC-Lma-053246	Leptosphaeria maculans	28.89	1.00e-124	439.00
IUUC-Laf-053502	Loxodonta africana	51.97	0.00e+00	1174.00
IUUC-Mcc-054802	Macaca mulatta	52.47	0.00e+00	1162.00
IUUC-Meu-056808	Macropus eugenii	53.55	0.00e+00	777.00
IUUC-Mor-057253	Magnaporthe oryzae	27.22	2.00e-105	376.00
IUUC-Mpo-057562	Magnaporthe poae	26.43	2.00e-110	393.00
IUUC-Mtr-057743	Medicago truncatula	91.92	0.00e+00	2050.00
IUUC-Mla-059154	Melampsora laricipopulina	27.21	1.00e-95	343.00
IUUC-Mga-059824	Meleagris gallopavo	51.53	0.00e+00	1090.00
IUUC-Mvi-060279	Microbotryum violaceum	28.95	5.00e-121	428.00
IUUC-Mmr-061215	Microcebus murinus	51.53	0.00e+00	1162.00
IUUC-Mdo-062028	Monodelphis domestica	49.59	0.00e+00	932.00
IUUC-Mmu-064327	Mus musculus	51.88	0.00e+00	1173.00
IUUC-Mac-065445	Musa acuminata	88.89	0.00e+00	1972.00
IUUC-Mpu-065814	Mustela putorius furo	50.13	0.00e+00	1112.00
IUUC-Mlu-067136	Myotis lucifugus	51.79	0.00e+00	1166.00
IUUC-Nfi-068355	Neosartorya fischeri	30.86	1.00e-128	453.00
IUUC-Ncr-068620	Neurospora crassa	29.01	1.00e-118	420.00
IUUC-Nle-069566	Nomascus leucogenys	52.38	0.00e+00	1155.00
IUUC-Opr-070915	Ochotona princeps	50.80	0.00e+00	876.00
IUUC-Ont-071753	Oreochromis niloticus	52.14	0.00e+00	1167.00
IUUC-Oan-073187	Ornithorhynchus anatinus	52.12	0.00e+00	1065.00
IUUC-Ocu-074619	Oryctolagus cuniculus	51.88	0.00e+00	1175.00
IUUC-Oba-075091	Oryza barthii	80.55	0.00e+00	1268.00
IUUC-Obr-076425	Oryza brachyantha	83.70	0.00e+00	1883.00
IUUC-Ogu-078794	Oryza glumaepatula	84.04	0.00e+00	1890.00
IUUC-Oin-079725	Oryza indica	82.75	0.00e+00	1850.00
IUUC-Olo-080842	Oryza longistaminata	80.68	0.00e+00	1699.00
IUUC-Ome-081818	Oryza meridionalis	83.94	0.00e+00	1886.00
IUUC-Oni-082879	Oryza nivara	83.39	0.00e+00	1867.00
IUUC-Opu-083361	Oryza punctata	83.08	0.00e+00	1882.00
IUUC-Oru-084781	Oryza rufipogon	84.04	0.00e+00	1890.00
IUUC-Osa-086293	Oryza sativa	84.04	0.00e+00	1890.00
IUUC-Ola-086881	Oryzias latipes	51.78	0.00e+00	1156.00
IUUC-Olu-087674	Ostreococcus lucimarinus	56.14	0.00e+00	1174.00
IUUC-Oga-089056	Otolemur garnettii	51.88	0.00e+00	1172.00
IUUC-Oar-089457	Ovis aries	52.56	0.00e+00	1163.00
IUUC-Ptr-091179	Pan troglodytes	51.73	0.00e+00	1152.00
IUUC-Pan-092019	Papio anubis	51.57	0.00e+00	1162.00
IUUC-Psi-093407	Pelodiscus sinensis	51.73	0.00e+00	1146.00
IUUC-Pma-094272	Petromyzon marinus	52.48	0.00e+00	1074.00
IUUC-Pno-094864	Phaeosphaeria nodorum	29.52	8.00e-133	467.00
IUUC-Ppa-095885	Physcomitrella patens	81.46	0.00e+00	1778.00
IUUC-Pfo-096083	Poecilia formosa	52.18	0.00e+00	1166.00
IUUC-Pab-098652	Pongo abelii	50.13	0.00e+00	1071.00
IUUC-Pop-099593	Populus trichocarpa	94.58	0.00e+00	2050.00
IUUC-Pca-100189	Procavia capensis	50.37	0.00e+00	661.00
IUUC-Ppe-101987	Prunus persica	93.30	0.00e+00	2006.00
IUUC-Pva-102605	Pteropus vampyrus	51.70	0.00e+00	1169.00
IUUC-Pgr-103659	Puccinia graminis	25.90	9.00e-72	265.00
IUUC-Ptt-103884	Puccinia triticina	22.98	3.00e-59	223.00
IUUC-Pte-104233	Pyrenophora teres	30.21	2.00e-135	476.00
IUUC-Pyt-104454	Pyrenophora triticirepentis	30.45	1.00e-131	463.00
IUUC-Rno-106004	Rattus norvegicus	51.97	0.00e+00	1175.00
IUUC-Sha-106726	Sarcophilus harrisii	50.51	0.00e+00	1051.00
IUUC-Sja-107864	Schizosaccharomyces japonicus	25.58	3.00e-89	322.00
IUUC-Spo-108029	Schizosaccharomyces pombe	27.02	1.00e-118	420.00
IUUC-Ssl-108441	Sclerotinia sclerotiorum	27.94	2.00e-109	390.00
IUUC-Smo-108808	Selaginella moellendorffii	80.73	0.00e+00	1847.00
IUUC-Sit-109735	Setaria italica	83.70	0.00e+00	1885.00
IUUC-Sly-111520	Solanum lycopersicum	92.42	0.00e+00	2051.00
IUUC-Sar-113606	Sorex araneus	52.07	4.00e-66	245.00
IUUC-Sbi-114539	Sorghum bicolor	81.24	0.00e+00	1853.00
IUUC-Sre-114936	Sporisorium reilianum	25.30	1.00e-70	261.00
IUUC-Ssc-116038	Sus scrofa	51.88	0.00e+00	1172.00
IUUC-Tgu-117512	Taeniopygia guttata	51.74	0.00e+00	1161.00
IUUC-Tru-117593	Takifugu rubripes	51.40	0.00e+00	1146.00
IUUC-Tsy-119513	Tarsius syrichta	50.00	2.00e-175	608.00
IUUC-Tni-120551	Tetraodon nigroviridis	47.87	0.00e+00	902.00
IUUC-Tca-121505	Theobroma cacao	95.50	0.00e+00	2055.00
IUUC-Tre-122136	Trichoderma reesei	27.53	4.00e-116	412.00
IUUC-Tvi-122512	Trichoderma virens	28.06	4.00e-121	428.00
IUUC-Tae-124186	Triticum aestivum	83.30	0.00e+00	1886.00
IUUC-Tur-126451	Triticum urartu	82.63	0.00e+00	1683.00
IUUC-Tme-127057	Tuber melanosporum	31.23	1.00e-126	446.00
IUUC-Ttr-128891	Tursiops truncatus	50.13	0.00e+00	739.00
IUUC-Uma-129583	Ustilago maydis	26.91	3.00e-68	253.00
IUUC-Vda-129870	Verticillium dahliae	26.45	5.00e-107	382.00
IUUC-Vpa-130117	Vicugna pacos	48.76	0.00e+00	877.00
IUUC-Xtr-131987	Xenopus tropicalis	51.78	0.00e+00	1151.00
IUUC-Xma-134117	Xiphophorus maculatus	51.44	0.00e+00	1136.00
IUUC-Zma-134758	Zea mays	83.76	0.00e+00	1886.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence