iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Tni-120427

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Chromosome 4 SCAF14752, whole genome shotgun sequence

Genbank Nucleotide ID

CAAE01014752

Gene Name

prpf4; GSTENG00024793001

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSTNIG00000013250.1	ENSTNIT00000016446.1	ENSTNIP00000016234.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.20e-39	132.8	389	427
UBD/Beta-Prp	2.70e-111	371.7	214	461

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH  + ++++f ++  +l++Gs+D+++kvW+lr  ++l 
   Q: 389  GHLKELYSVNFsPNgYHLATGSGDNSCKVWELRNRKCLY 427
           799999******77799****************999875 PP

UBD/Beta-Prp

   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgk........ilvtgseDrtikvwdlstgkcvht 89
           ++ +i+  +fspd+++lat+s++g  k+w+v + +l+r+l gh+  v av f p++          l++++ D+ +k+w+l++ ++v  
   Q: 214  DSRPISFCHFSPDSKMLATASWSGLCKLWSVPDCSLIRTLRGHNTNVGAVVFRPQAGislhpsdvNLASCAADGSVKLWSLESDEPVAD 302
           67799999**************************************99999999998888888889*********************** PP
   S: 90   lkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgg 178
           ++gh+++v  ++++psg +l ++  d+  r+wdle ++++   ++gh++ v  +++hpdg+l ++G+lD++ r+Wdl+tg+++  l+g 
   Q: 303  IEGHTERVSRVTWHPSGRFLGTTCYDNSWRLWDLEVQEEIL-HQEGHSKGVHDIHFHPDGSLAATGGLDSFGRVWDLRTGRCVVFLEG- 389
           *****************************************.********************************************99. PP
   S: 179  htdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfs.pnderlvsgssDgsiriW 249
           h +  ys++f++ng +l++gs d++ k+w+l++ +c++t   h++ ++ vrf   ++++l++g+ D++ ++W
   Q: 390  HLKELYSVNFSPNGYHLATGSGDNSCKVWELRNRKCLYTIPSHQNLISAVRFQpTDGHFLLTGAYDNTAKVW 461
           *****************************************************8899*************** PP

Organism

Tetraodon nigroviridis

Protein Sequence
(Fasta)

MSDDEDFAPA VKRSRVFYGS LEEKERERLS SEATGTSNAV KVGIEAGNIN ISSGETLELE 60
DRVSERQQEA LAAFERRRRA RQITVSTDDA EVKAGLRALG EPITLFGEGP ADRRERLRNV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAGAAGAAGC GAGTGAAGCG GTGTTTACGC GACGCCGTTC AATTTTCCTT CTACGTGCAG 60
GTTGTGTGAC TCATTATTGC ACCGACAGTT CGTTATTAGG TTGTTTTGTG TGTCTGTTTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR014906--PRP4-like
IPR027295--Quinoprotein_ADH-like_fam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08799--PRP4
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00500--SFM
SM00320--WD40

Gene Ontology

GO:0043009--P:chordate embryonic development
GO:0060041--P:retina development in camera-type eye

KEGG

tng:GSTEN00024793G001

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000771	Aegilops tauschii	44.16	3.00e-101	361.00
IUUC-Aml-001737	Ailuropoda melanoleuca	74.85	0.00e+00	775.00
IUUC-Atr-002828	Amborella trichopoda	42.89	3.00e-101	362.00
IUUC-Apl-003723	Anas platyrhynchos	76.24	0.00e+00	781.00
IUUC-Aca-004972	Anolis carolinensis	75.64	0.00e+00	742.00
IUUC-Aly-006531	Arabidopsis lyrata	42.24	1.00e-90	327.00
IUUC-Ath-007367	Arabidopsis thaliana	44.12	1.00e-104	373.00
IUUC-Ago-007893	Ashbya gossypii	33.72	5.00e-54	204.00
IUUC-Acl-008236	Aspergillus clavatus	36.84	5.00e-77	281.00
IUUC-Afl-008522	Aspergillus flavus	38.76	4.00e-88	318.00
IUUC-Afu-008904	Aspergillus fumigatus	37.13	3.00e-82	298.00
IUUC-Ani-009198	Aspergillus nidulans	38.65	1.00e-87	316.00
IUUC-Ang-009662	Aspergillus niger	40.32	2.00e-87	316.00
IUUC-Aor-009881	Aspergillus oryzae	38.20	4.00e-88	318.00
IUUC-Ate-010333	Aspergillus terreus	36.97	6.00e-79	288.00
IUUC-Ame-011697	Astyanax mexicanus	80.00	0.00e+00	798.00
IUUC-Bgr-012254	Blumeria graminis	40.00	7.00e-96	344.00
IUUC-Bta-012615	Bos taurus	74.65	0.00e+00	766.00
IUUC-Bci-013720	Botrytis cinerea	39.29	2.00e-95	342.00
IUUC-Bdi-014302	Brachypodium distachyon	44.13	3.00e-106	378.00
IUUC-Bol-015594	Brassica oleracea	43.32	3.00e-94	339.00
IUUC-Bra-017465	Brassica rapa	43.10	3.00e-94	338.00
IUUC-Cel-018632	Caenorhabditis elegans	46.00	2.00e-110	392.00
IUUC-Cja-019747	Callithrix jacchus	74.85	0.00e+00	777.00
IUUC-Cfa-020288	Canis familiaris	74.85	0.00e+00	776.00
IUUC-Cpo-021440	Cavia porcellus	73.52	0.00e+00	762.00
IUUC-Cre-022716	Chlamydomonas reinhardtii	46.78	9.00e-87	313.00
IUUC-Csa-023139	Chlorocebus sabaeus	78.38	8.00e-168	582.00
IUUC-Cho-024481	Choloepus hoffmanni	75.00	0.00e+00	689.00
IUUC-Cin-025106	Ciona intestinalis	59.55	2.00e-172	598.00
IUUC-Csv-026087	Ciona savignyi	58.65	9.00e-170	589.00
IUUC-Cgl-026538	Colletotrichum gloeosporioides	38.58	1.00e-88	321.00
IUUC-Cne-026793	Cryptococcus neoformans	39.78	2.00e-100	359.00
IUUC-Dre-028723	Danio rerio	80.79	0.00e+00	785.00
IUUC-Dno-029299	Dasypus novemcinctus	74.65	0.00e+00	774.00
IUUC-Dor-030345	Dipodomys ordii	50.59	2.00e-60	226.00
IUUC-Dse-031562	Dothistroma septosporum	36.09	6.00e-80	291.00
IUUC-Dme-031783	Drosophila melanogaster	49.18	1.00e-128	453.00
IUUC-Ete-032669	Echinops telfairi	75.45	0.00e+00	778.00
IUUC-Eca-033566	Equus caballus	74.85	0.00e+00	775.00
IUUC-Eeu-034524	Erinaceus europaeus	79.92	3.00e-123	434.00
IUUC-Fca-036215	Felis catus	74.85	0.00e+00	776.00
IUUC-Fal-037018	Ficedula albicollis	75.52	0.00e+00	654.00
IUUC-Fox-037936	Fusarium oxysporum	37.53	6.00e-80	291.00
IUUC-Fso-038366	Fusarium solani	39.16	5.00e-89	321.00
IUUC-Gmo-038966	Gadus morhua	70.11	5.00e-151	526.00
IUUC-Ggr-039942	Gaeumannomyces graminis	37.99	4.00e-82	298.00
IUUC-Gga-040797	Gallus gallus	76.45	0.00e+00	780.00
IUUC-Gac-042598	Gasterosteus aculeatus	80.31	0.00e+00	751.00
IUUC-Gma-044220	Glycine max	45.78	2.00e-99	356.00
IUUC-Ggo-044682	Gorilla gorilla	74.90	0.00e+00	773.00
IUUC-Hsa-045804	Homo sapiens	75.05	0.00e+00	781.00
IUUC-Hvu-047567	Hordeum vulgare	43.94	8.00e-96	343.00
IUUC-Itr-047882	Ictidomys tridecemlineatus	75.25	0.00e+00	779.00
IUUC-Kpa-049369	Komagataella pastoris	34.40	3.00e-63	235.00
IUUC-Lch-050074	Latimeria chalumnae	70.98	0.00e+00	707.00
IUUC-Lpe-051333	Leersia perrieri	42.86	5.00e-99	354.00
IUUC-Loc-052164	Lepisosteus oculatus	80.12	0.00e+00	808.00
IUUC-Lma-053088	Leptosphaeria maculans	37.67	2.00e-80	292.00
IUUC-Laf-053460	Loxodonta africana	74.85	0.00e+00	776.00
IUUC-Mcc-055859	Macaca mulatta	74.85	0.00e+00	776.00
IUUC-Meu-056134	Macropus eugenii	74.25	0.00e+00	771.00
IUUC-Mor-057251	Magnaporthe oryzae	35.41	1.00e-82	300.00
IUUC-Mpo-057375	Magnaporthe poae	41.20	2.00e-53	202.00
IUUC-Mtr-057656	Medicago truncatula	46.03	4.00e-96	344.00
IUUC-Mla-059145	Melampsora laricipopulina	39.32	1.00e-94	339.00
IUUC-Mga-059855	Meleagris gallopavo	75.45	0.00e+00	771.00
IUUC-Mvi-060372	Microbotryum violaceum	42.75	1.00e-95	343.00
IUUC-Mmr-060826	Microcebus murinus	75.25	0.00e+00	777.00
IUUC-Mdo-062748	Monodelphis domestica	74.45	0.00e+00	771.00
IUUC-Mmu-063351	Mus musculus	75.05	0.00e+00	776.00
IUUC-Mac-064846	Musa acuminata	44.24	5.00e-96	344.00
IUUC-Mpu-066006	Mustela putorius furo	74.85	0.00e+00	776.00
IUUC-Mlu-067398	Myotis lucifugus	74.65	0.00e+00	773.00
IUUC-Nfi-068399	Neosartorya fischeri	37.13	1.00e-87	317.00
IUUC-Ncr-068711	Neurospora crassa	38.55	6.00e-90	324.00
IUUC-Nle-069982	Nomascus leucogenys	74.85	0.00e+00	777.00
IUUC-Opr-070596	Ochotona princeps	75.05	0.00e+00	778.00
IUUC-Ont-072374	Oreochromis niloticus	88.85	0.00e+00	885.00
IUUC-Oan-073166	Ornithorhynchus anatinus	77.24	0.00e+00	641.00
IUUC-Ocu-074371	Oryctolagus cuniculus	75.05	0.00e+00	777.00
IUUC-Oba-075083	Oryza barthii	43.22	4.00e-99	354.00
IUUC-Obr-076405	Oryza brachyantha	43.56	2.00e-99	355.00
IUUC-Ogl-077683	Oryza glaberrima	43.22	5.00e-99	354.00
IUUC-Ogu-078486	Oryza glumaepatula	43.46	9.00e-99	353.00
IUUC-Oin-079679	Oryza indica	43.22	2.00e-101	363.00
IUUC-Olo-080243	Oryza longistaminata	44.82	2.00e-89	322.00
IUUC-Ome-081230	Oryza meridionalis	43.22	3.00e-101	362.00
IUUC-Oni-082961	Oryza nivara	43.22	2.00e-101	362.00
IUUC-Opu-083189	Oryza punctata	42.83	5.00e-98	351.00
IUUC-Oru-084353	Oryza rufipogon	43.22	3.00e-101	361.00
IUUC-Osa-085458	Oryza sativa	43.22	3.00e-101	362.00
IUUC-Ola-086940	Oryzias latipes	86.96	0.00e+00	863.00
IUUC-Olu-087580	Ostreococcus lucimarinus	35.02	3.00e-63	235.00
IUUC-Oga-088703	Otolemur garnettii	71.29	0.00e+00	729.00
IUUC-Oar-089829	Ovis aries	74.26	0.00e+00	761.00
IUUC-Ptr-090838	Pan troglodytes	75.05	0.00e+00	781.00
IUUC-Pan-092261	Papio anubis	74.51	0.00e+00	770.00
IUUC-Psi-093020	Pelodiscus sinensis	76.18	0.00e+00	784.00
IUUC-Pno-094858	Phaeosphaeria nodorum	37.08	1.00e-76	280.00
IUUC-Ppa-095531	Physcomitrella patens	45.00	3.00e-113	402.00
IUUC-Pfo-096812	Poecilia formosa	79.96	0.00e+00	783.00
IUUC-Pab-097805	Pongo abelii	67.13	0.00e+00	676.00
IUUC-Pop-100051	Populus trichocarpa	43.64	9.00e-101	360.00
IUUC-Pca-100152	Procavia capensis	74.85	0.00e+00	776.00
IUUC-Ppe-101244	Prunus persica	44.80	1.00e-104	373.00
IUUC-Pva-102529	Pteropus vampyrus	71.68	0.00e+00	733.00
IUUC-Pgr-103550	Puccinia graminis	35.29	1.00e-93	337.00
IUUC-Ptt-103951	Puccinia triticina	36.59	8.00e-72	264.00
IUUC-Pte-104151	Pyrenophora teres	36.92	2.00e-76	279.00
IUUC-Pyt-104571	Pyrenophora triticirepentis	37.58	7.00e-79	287.00
IUUC-Rno-105747	Rattus norvegicus	74.85	0.00e+00	774.00
IUUC-Sce-106418	Saccharomyces cerevisiae	35.66	4.00e-68	251.00
IUUC-Sha-107334	Sarcophilus harrisii	74.45	0.00e+00	773.00
IUUC-Sja-107794	Schizosaccharomyces japonicus	36.03	2.00e-69	256.00
IUUC-Spo-108189	Schizosaccharomyces pombe	36.85	3.00e-75	275.00
IUUC-Ssl-108550	Sclerotinia sclerotiorum	38.84	6.00e-94	337.00
IUUC-Smo-108924	Selaginella moellendorffii	44.68	6.00e-108	384.00
IUUC-Sit-110102	Setaria italica	41.63	2.00e-99	356.00
IUUC-Sly-111668	Solanum lycopersicum	45.83	1.00e-103	370.00
IUUC-Stu-111928	Solanum tuberosum	45.60	1.00e-103	369.00
IUUC-Sar-113266	Sorex araneus	66.34	0.00e+00	645.00
IUUC-Sbi-114134	Sorghum bicolor	42.33	4.00e-100	358.00
IUUC-Sre-115114	Sporisorium reilianum	41.48	4.00e-99	354.00
IUUC-Ssc-115443	Sus scrofa	74.85	0.00e+00	775.00
IUUC-Tgu-117157	Taeniopygia guttata	75.66	0.00e+00	747.00
IUUC-Tru-118587	Takifugu rubripes	93.36	0.00e+00	908.00
IUUC-Tsy-119157	Tarsius syrichta	76.67	0.00e+00	641.00
IUUC-Tca-121368	Theobroma cacao	45.56	2.00e-105	375.00
IUUC-Tre-122074	Trichoderma reesei	38.05	1.00e-85	310.00
IUUC-Tvi-122349	Trichoderma virens	37.31	3.00e-84	305.00
IUUC-Tae-125651	Triticum aestivum	44.16	2.00e-101	362.00
IUUC-Tur-126532	Triticum urartu	42.82	2.00e-90	325.00
IUUC-Tme-126951	Tuber melanosporum	40.70	2.00e-98	352.00
IUUC-Tbe-128136	Tupaia belangeri	67.72	0.00e+00	681.00
IUUC-Ttr-129169	Tursiops truncatus	77.52	5.00e-126	444.00
IUUC-Uma-129399	Ustilago maydis	41.32	3.00e-98	352.00
IUUC-Vda-129842	Verticillium dahliae	38.17	1.00e-88	319.00
IUUC-Vpa-130440	Vicugna pacos	74.65	0.00e+00	775.00
IUUC-Vvi-131075	Vitis vinifera	44.57	1.00e-103	370.00
IUUC-Xtr-132713	Xenopus tropicalis	43.30	2.00e-90	325.00
IUUC-Xma-133002	Xiphophorus maculatus	89.23	0.00e+00	660.00
IUUC-Yli-134569	Yarrowia lipolytica	37.44	5.00e-77	281.00
IUUC-Zma-135799	Zea mays	40.88	3.00e-99	355.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence