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Basic Information Integrated Annotations

Tag Content
UUCD2 ID IUUC-Cel-018378
UUCD1 version UUC-CaE-00576
Ensembl Protein ID R06A4.9a
UniProt Accession U4PCM1; U4PCM1_CAEEL
Genbank Protein ID CDH93484.1
Protein Name Polyadenylation Factor Subunit homolog
Genbank Nucleotide ID BX284602
Gene Name pfs-2; CELE_R06A4.9; R06A4.9
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
WBGene00011051 R06A4.9a R06A4.9a
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
microRNARAID2
Post-translational Modifications (PTMs)
dbPAF
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 6.70e-37 124.2 268 308
UBD/Beta-Prp 4.60e-70 236.4 139 356
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdD..gtikvWDlrtgvllk 37
    gH ++v+c+++ ++ +l+++Gs+D +k+WD+++g +l
   Q: 268 GHGAEVRCIDWhPTkGLIATGSRDtqQPVKIWDPKSGSCLA 308
    8***********999*********9777*********9985 PP
   


   UBD/Beta-Prp

   S: 5    lkghhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfsps 105
    +++ k ++++v++sp+++ l+tg+++g ++w+ t ++ l+ h+++++a+k+ +++++l+++ + + +k w ++ + + +++ ++ l+f p+
   Q: 139 AMNKVKCPVYSVCWSPEGKRLITGCQTGEFTLWNGTAFNFETILQAHDSAIRALKWASNEQWLLSADQGGYVKYWQPNMNNAHMFSAHKDEAIRGLAFAPT 239
    56666779999****************************************************************77665555555555999999****** PP
   S: 106 gdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrt..vrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtv 204
    + k++++s+d t+rvwd +++ + +l+gh + v+c+ +hp++ l+++Gs D++ v++Wd k+g++l tl++ h++sv ++f++ng+ l++g++d v
   Q: 240 DVKFATASDDGTARVWDFARYTEER-VLRGHGAEVRCIDWHPTKGLIATGSRDTQqpVKIWDPKSGSCLATLQE-HKSSVMAVEFNKNGNWLLTGGRDHLV 338
    ************************9.***************************8767****************9.************************** PP
   S: 205 klwdlqtgecvrtlnght 222
    k++d++ + +rt+++h+
   Q: 339 KMYDIRMMKEMRTYRAHK 356
    ******9999*******8 PP
   

Organism Caenorhabditis elegans
Protein Sequence
(Fasta)
MTAVSNIASF NMNGGMMRGN QMPNVTLTIQ PSTSSMQNSQ PRIMNNHHHP HNRFQREHVM 60
PDVMGDGPGR RLRKNVANVR RHVDYVSTVL NHCENRLWQY GKQRILQQPD ILYQQYAVPA 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Cel-018378|E3,WD_repeat;UBD,Beta-Prp|Caenorhabditis elegans
Please wait for a moment...
Nucleotide Sequence
(Fasta)
GTAATAACAC TAAGGATGAC AGCCGTATCA AACATAGTTG GTTTTGTCCT TAATTGCTAA 60
AAATCTAAAT TTAAATTTTA TCGGCGTCTT TCAACATGAA CGGTGGAATG ATGCGTGGCA 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Cel-018378|E3,WD_repeat;UBD,Beta-Prp|Caenorhabditis elegans
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR003143--Cyt_cd1_C
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005847--C:mRNA cleavage and polyadenylation specificity factor complex
GO:0016607--C:nuclear speck
GO:0006379--P:mRNA cleavage

KEGG cel:CELE_R06A4.9
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-001064 Aegilops tauschii 42.46 8.00e-104 369.00
IUUC-Aml-001363 Ailuropoda melanoleuca 52.65 1.00e-142 499.00
IUUC-Atr-003030 Amborella trichopoda 49.08 2.00e-113 401.00
IUUC-Apl-003409 Anas platyrhynchos 51.83 7.00e-142 497.00
IUUC-Aca-004694 Anolis carolinensis 52.27 2.00e-143 503.00
IUUC-Aly-006063 Arabidopsis lyrata 44.24 2.00e-111 395.00
IUUC-Ath-006583 Arabidopsis thaliana 41.51 3.00e-109 387.00
IUUC-Ago-007805 Ashbya gossypii 37.10 5.00e-72 263.00
IUUC-Acl-008075 Aspergillus clavatus 39.56 1.00e-86 312.00
IUUC-Afl-008582 Aspergillus flavus 41.19 1.00e-86 312.00
IUUC-Afu-008817 Aspergillus fumigatus 40.77 2.00e-77 281.00
IUUC-Ani-009391 Aspergillus nidulans 37.82 3.00e-78 285.00
IUUC-Ang-009750 Aspergillus niger 42.39 1.00e-71 262.00
IUUC-Aor-010085 Aspergillus oryzae 40.36 4.00e-87 314.00
IUUC-Ate-010397 Aspergillus terreus 39.49 1.00e-85 309.00
IUUC-Ame-010741 Astyanax mexicanus 55.26 4.00e-87 315.00
IUUC-Bgr-012169 Blumeria graminis 46.22 2.00e-92 332.00
IUUC-Bta-013265 Bos taurus 52.65 2.00e-142 499.00
IUUC-Bci-013762 Botrytis cinerea 44.24 6.00e-95 340.00
IUUC-Bdi-014849 Brachypodium distachyon 44.50 3.00e-112 397.00
IUUC-Bol-015325 Brassica oleracea 45.61 4.00e-116 410.00
IUUC-Bra-017187 Brassica rapa 45.37 2.00e-115 407.00
IUUC-Cja-019547 Callithrix jacchus 52.65 1.00e-142 499.00
IUUC-Cfa-020031 Canis familiaris 52.65 2.00e-142 499.00
IUUC-Cpo-021554 Cavia porcellus 54.14 6.00e-140 490.00
IUUC-Cre-022830 Chlamydomonas reinhardtii 40.26 8.00e-69 253.00
IUUC-Csa-023146 Chlorocebus sabaeus 52.43 5.00e-142 498.00
IUUC-Cho-024679 Choloepus hoffmanni 54.08 8.00e-131 460.00
IUUC-Cin-025415 Ciona intestinalis 56.79 4.00e-133 467.00
IUUC-Csv-026003 Ciona savignyi 50.71 4.00e-130 456.00
IUUC-Cgl-026391 Colletotrichum gloeosporioides 47.65 3.00e-95 341.00
IUUC-Cne-026983 Cryptococcus neoformans 42.07 7.00e-79 287.00
IUUC-Cme-027147 Cyanidioschyzon merolae 45.76 1.00e-101 362.00
IUUC-Dre-028545 Danio rerio 49.80 3.00e-142 498.00
IUUC-Dno-029677 Dasypus novemcinctus 51.98 4.00e-143 501.00
IUUC-Dse-031371 Dothistroma septosporum 45.38 1.00e-85 309.00
IUUC-Dme-031663 Drosophila melanogaster 51.08 8.00e-143 499.00
IUUC-Ete-032511 Echinops telfairi 46.02 3.00e-116 412.00
IUUC-Eca-034152 Equus caballus 52.65 2.00e-142 498.00
IUUC-Eeu-034560 Erinaceus europaeus 43.26 1.00e-43 171.00
IUUC-Fca-035820 Felis catus 52.65 2.00e-142 499.00
IUUC-Fox-037958 Fusarium oxysporum 43.93 1.00e-94 339.00
IUUC-Fso-038162 Fusarium solani 43.46 2.00e-92 332.00
IUUC-Gmo-039708 Gadus morhua 48.61 6.00e-137 480.00
IUUC-Ggr-040031 Gaeumannomyces graminis 43.31 6.00e-86 310.00
IUUC-Gga-040963 Gallus gallus 51.84 1.00e-142 499.00
IUUC-Gac-041541 Gasterosteus aculeatus 48.01 4.00e-135 474.00
IUUC-Gma-043757 Glycine max 48.19 4.00e-113 400.00
IUUC-Ggo-045564 Gorilla gorilla 51.98 2.00e-142 499.00
IUUC-Hsa-045833 Homo sapiens 52.65 1.00e-142 500.00
IUUC-Hvu-047848 Hordeum vulgare 45.81 1.00e-84 305.00
IUUC-Itr-048083 Ictidomys tridecemlineatus 52.65 2.00e-142 498.00
IUUC-Kpa-049308 Komagataella pastoris 40.70 2.00e-83 301.00
IUUC-Lch-050525 Latimeria chalumnae 52.09 2.00e-141 495.00
IUUC-Lpe-051364 Leersia perrieri 44.88 1.00e-98 352.00
IUUC-Loc-052696 Lepisosteus oculatus 51.84 2.00e-143 502.00
IUUC-Lma-052951 Leptosphaeria maculans 46.24 1.00e-96 345.00
IUUC-Laf-053653 Loxodonta africana 52.65 3.00e-142 498.00
IUUC-Mcc-055797 Macaca mulatta 52.65 1.00e-142 499.00
IUUC-Meu-056331 Macropus eugenii 54.93 3.00e-112 399.00
IUUC-Mor-057168 Magnaporthe oryzae 42.19 6.00e-90 323.00
IUUC-Mpo-057510 Magnaporthe poae 42.31 4.00e-58 217.00
IUUC-Mtr-058032 Medicago truncatula 48.28 7.00e-112 396.00
IUUC-Mla-058852 Melampsora laricipopulina 46.79 1.00e-104 372.00
IUUC-Mga-059311 Meleagris gallopavo 51.98 1.00e-142 499.00
IUUC-Mvi-060544 Microbotryum violaceum 50.31 2.00e-101 361.00
IUUC-Mmr-061143 Microcebus murinus 52.65 2.00e-142 499.00
IUUC-Mdo-061977 Monodelphis domestica 52.65 3.00e-142 498.00
IUUC-Mmu-063922 Mus musculus 52.65 9.00e-143 500.00
IUUC-Mac-064961 Musa acuminata 45.05 9.00e-113 399.00
IUUC-Mpu-066079 Mustela putorius furo 56.88 9.00e-134 470.00
IUUC-Mlu-067247 Myotis lucifugus 52.65 1.00e-142 499.00
IUUC-Nfi-068255 Neosartorya fischeri 42.06 3.00e-84 304.00
IUUC-Ncr-068909 Neurospora crassa 41.75 2.00e-92 332.00
IUUC-Nle-068994 Nomascus leucogenys 52.65 9.00e-143 500.00
IUUC-Opr-071079 Ochotona princeps 53.65 1.00e-142 499.00
IUUC-Ont-071971 Oreochromis niloticus 48.20 3.00e-140 491.00
IUUC-Oan-073135 Ornithorhynchus anatinus 55.42 8.00e-135 473.00
IUUC-Ocu-073982 Oryctolagus cuniculus 52.89 3.00e-142 498.00
IUUC-Oba-075297 Oryza barthii 44.30 6.00e-101 360.00
IUUC-Obr-076641 Oryza brachyantha 48.07 2.00e-110 391.00
IUUC-Ogl-077539 Oryza glaberrima 49.62 7.00e-83 300.00
IUUC-Ogu-078807 Oryza glumaepatula 44.30 7.00e-101 360.00
IUUC-Oin-079229 Oryza indica 47.77 4.00e-112 397.00
IUUC-Olo-080371 Oryza longistaminata 45.30 3.00e-99 354.00
IUUC-Ome-081149 Oryza meridionalis 44.05 4.00e-100 357.00
IUUC-Oni-082970 Oryza nivara 44.30 5.00e-101 360.00
IUUC-Opu-083415 Oryza punctata 44.88 2.00e-98 352.00
IUUC-Oru-085236 Oryza rufipogon 44.30 4.00e-101 361.00
IUUC-Osa-085988 Oryza sativa 27.97 2.00e-27 116.00
IUUC-Ola-087421 Oryzias latipes 49.50 2.00e-141 494.00
IUUC-Olu-087821 Ostreococcus lucimarinus 45.75 4.00e-96 343.00
IUUC-Oga-088132 Otolemur garnettii 52.65 2.00e-142 499.00
IUUC-Oar-089513 Ovis aries 52.65 2.00e-142 499.00
IUUC-Ptr-090717 Pan troglodytes 52.65 1.00e-142 499.00
IUUC-Pan-092108 Papio anubis 52.65 1.00e-142 499.00
IUUC-Psi-093892 Pelodiscus sinensis 52.65 4.00e-142 498.00
IUUC-Pma-094561 Petromyzon marinus 56.65 7.00e-141 494.00
IUUC-Pno-094943 Phaeosphaeria nodorum 43.27 2.00e-96 345.00
IUUC-Ppa-095359 Physcomitrella patens 50.66 2.00e-118 418.00
IUUC-Pfo-096516 Poecilia formosa 53.08 8.00e-138 483.00
IUUC-Pab-097759 Pongo abelii 52.65 1.00e-142 499.00
IUUC-Pop-098892 Populus trichocarpa 49.21 4.00e-116 410.00
IUUC-Ppe-101957 Prunus persica 47.07 3.00e-114 404.00
IUUC-Pva-102918 Pteropus vampyrus 52.88 2.00e-142 499.00
IUUC-Pgr-103594 Puccinia graminis 45.08 1.00e-106 379.00
IUUC-Ptt-103879 Puccinia triticina 48.66 5.00e-98 350.00
IUUC-Pte-104419 Pyrenophora teres 44.53 7.00e-99 353.00
IUUC-Pyt-104718 Pyrenophora triticirepentis 46.78 4.00e-97 347.00
IUUC-Rno-105838 Rattus norvegicus 51.84 7.00e-143 500.00
IUUC-Sce-106331 Saccharomyces cerevisiae 35.49 7.00e-74 269.00
IUUC-Sha-107435 Sarcophilus harrisii 52.42 7.00e-141 494.00
IUUC-Sja-107796 Schizosaccharomyces japonicus 43.04 8.00e-92 329.00
IUUC-Spo-108163 Schizosaccharomyces pombe 42.78 1.00e-91 328.00
IUUC-Smo-109602 Selaginella moellendorffii 50.13 3.00e-115 406.00
IUUC-Sit-109729 Setaria italica 46.70 5.00e-112 397.00
IUUC-Sly-111679 Solanum lycopersicum 44.89 2.00e-115 408.00
IUUC-Sar-113157 Sorex araneus 52.65 2.00e-142 498.00
IUUC-Sbi-114853 Sorghum bicolor 46.33 4.00e-112 397.00
IUUC-Sre-115085 Sporisorium reilianum 39.66 3.00e-92 331.00
IUUC-Ssc-116286 Sus scrofa 52.54 2.00e-141 496.00
IUUC-Tgu-117219 Taeniopygia guttata 51.84 1.00e-142 499.00
IUUC-Tru-117550 Takifugu rubripes 56.89 5.00e-139 486.00
IUUC-Tsy-119294 Tarsius syrichta 52.65 8.00e-143 500.00
IUUC-Tni-120561 Tetraodon nigroviridis 48.80 4.00e-141 494.00
IUUC-Tca-121347 Theobroma cacao 45.14 9.00e-116 409.00
IUUC-Tre-122018 Trichoderma reesei 44.44 1.00e-94 339.00
IUUC-Tvi-122413 Trichoderma virens 43.93 2.00e-93 335.00
IUUC-Tae-123904 Triticum aestivum 44.55 4.00e-113 400.00
IUUC-Tme-127077 Tuber melanosporum 48.19 3.00e-92 331.00
IUUC-Tbe-127744 Tupaia belangeri 42.86 6.00e-76 278.00
IUUC-Ttr-128777 Tursiops truncatus 45.17 5.00e-110 391.00
IUUC-Uma-129568 Ustilago maydis 45.00 3.00e-90 324.00
IUUC-Vda-129834 Verticillium dahliae 47.67 3.00e-92 331.00
IUUC-Vpa-130563 Vicugna pacos 59.78 1.00e-32 134.00
IUUC-Vvi-131360 Vitis vinifera 46.65 3.00e-116 411.00
IUUC-Xtr-132630 Xenopus tropicalis 54.37 7.00e-142 497.00
IUUC-Xma-133665 Xiphophorus maculatus 52.97 3.00e-139 488.00
IUUC-Yli-134556 Yarrowia lipolytica 41.67 2.00e-77 281.00
IUUC-Zma-135787 Zea mays 44.42 1.00e-112 399.00
Created Date 25-Jun-2017

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