iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pop-099865

Ensembl Protein ID

POPTR_0004s19570.1

UniProt Accession

U5GJM6; U5GJM6_POPTR

Genbank Protein ID

ERP62424.1

Protein Name

Protein HIRA

Genbank Nucleotide ID

CM000340

Gene Name

POPTRDRAFT_796209; POPTR_0004s19570g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0004s19570	POPTR_0004s19570.1	POPTR_0004s19570.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	7.00e-21	74.6	123	160
UBD/Beta-Prp	5.90e-40	138.4	11	213

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvll 36
           gHt++v +l++ +d  +l+sGs D+ti+vW+++ g ++
   Q: 123  GHTADVVDLNWsPDdSILASGSLDNTIHVWNMSNGICT 160
           8***********77799**************9998886 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkfspdksllatgsrdgtikvwdvttgkl...........lrslsgheaevtavkfspdgkilvtgseDrtikvw........ 79
           h+  +i ++++ p++  +atg+ d+++++w++ + +            l++l +h + v++v++ ++g + ++gs+D++i v         
   Q: 11   HEGMQIFSIDIQPGGYRFATGGGDHKVRIWNMNSVSRdleineptqrlLATLRDHFGSVNCVRWAKHGRYVASGSDDQVILVHerkpgsgt 101
           55667788999**********************988899********************************************88888888 PP
   S: 80   .........dlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtv 161
                    d+++ k  +tl+gh+++v++l++sp+++ l+sGs d+ti+vw++++g c   +l+gh+++v +v+++p g+ ++s s+D+tv
   Q: 102  tefgsgeppDVENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHVWNMSNGICTA-VLRGHSSLVKGVTWDPIGSFIASQSDDKTV 191
           888888888888***********************************************9.****************************** PP
   S: 162  rlWdlktgkllrtltgghtdsv 183
            +W+ +  +l ++  g  t+s 
   Q: 192  IIWRTSDWSLAHRTDGHWTKSL 213
           ****966666666655334443 PP

Organism

Populus trichocarpa

Functional Description
(View)

Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle.

Protein Sequence
(Fasta)

MIAEKPSWVR HEGMQIFSID IQPGGYRFAT GGGDHKVRIW NMNSVSRDLE INEPTQRLLA 60
TLRDHFGSVN CVRWAKHGRY VASGSDDQVI LVHERKPGSG TTEFGSGEPP DVENWKVAMT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGATTGCGG AGAAACCCAG TTGGGTTAGG CATGAAGGAA TGCAAATTTT CTCCATTGAT 60
ATTCAGCCTG GTGGCTATAG GTTTGCTACT GGTGGAGGTG ACCACAAGGT ATGTTCTTTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0156--Chromatin regulator
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0678--Repressor
KW-0804--Transcription
KW-0805--Transcription regulation
KW-0853--WD repeat

Interpro

IPR031120--HIR1
IPR011494--Hira
IPR011044--Quino_amine_DH_bsu
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF07569--Hira
PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0000790--C:nuclear chromatin
GO:0031491--F:nucleosome binding
GO:0003714--F:transcription corepressor activity
GO:0016569--P:covalent chromatin modification
GO:0006336--P:DNA replication-independent nucleosome assembly
GO:0031935--P:regulation of chromatin silencing
GO:0006351--P:transcription, DNA-templated

KEGG

pop:POPTR_0004s19570g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001723	Ailuropoda melanoleuca	41.41	5.00e-80	292.00
IUUC-Apl-003197	Anas platyrhynchos	37.30	3.00e-81	296.00
IUUC-Ago-007766	Ashbya gossypii	30.28	7.00e-64	238.00
IUUC-Afu-008781	Aspergillus fumigatus	31.82	5.00e-64	239.00
IUUC-Ani-009272	Aspergillus nidulans	29.62	1.00e-58	221.00
IUUC-Bgr-012237	Blumeria graminis	34.27	5.00e-64	239.00
IUUC-Cfa-020132	Canis familiaris	41.09	4.00e-80	292.00
IUUC-Cre-022846	Chlamydomonas reinhardtii	35.81	1.00e-70	261.00
IUUC-Cgl-026655	Colletotrichum gloeosporioides	25.86	5.00e-82	298.00
IUUC-Dor-030687	Dipodomys ordii	37.99	2.00e-63	237.00
IUUC-Fox-037906	Fusarium oxysporum	34.79	3.00e-70	259.00
IUUC-Fso-038409	Fusarium solani	25.71	2.00e-83	303.00
IUUC-Ggr-040016	Gaeumannomyces graminis	34.87	3.00e-67	249.00
IUUC-Gga-040936	Gallus gallus	37.83	3.00e-85	309.00
IUUC-Mpo-057364	Magnaporthe poae	34.34	1.00e-67	251.00
IUUC-Mga-060181	Meleagris gallopavo	37.65	8.00e-81	295.00
IUUC-Mmr-060871	Microcebus murinus	36.82	2.00e-85	310.00
IUUC-Mpu-066732	Mustela putorius furo	41.41	4.00e-80	292.00
IUUC-Oga-087935	Otolemur garnettii	37.01	2.00e-81	296.00
IUUC-Psi-094053	Pelodiscus sinensis	37.02	1.00e-80	294.00
IUUC-Pno-094985	Phaeosphaeria nodorum	31.94	5.00e-59	222.00
IUUC-Ptt-103900	Puccinia triticina	27.99	8.00e-60	224.00
IUUC-Pte-104209	Pyrenophora teres	34.86	8.00e-71	261.00
IUUC-Pyt-104802	Pyrenophora triticirepentis	34.86	6.00e-70	258.00
IUUC-Sce-106291	Saccharomyces cerevisiae	30.43	2.00e-67	249.00
IUUC-Sja-107833	Schizosaccharomyces japonicus	27.80	1.00e-92	334.00
IUUC-Tvi-122262	Trichoderma virens	34.72	9.00e-61	228.00
IUUC-Tme-127202	Tuber melanosporum	28.84	8.00e-49	188.00
IUUC-Tbe-127350	Tupaia belangeri	34.40	6.00e-47	182.00
IUUC-Vvi-131397	Vitis vinifera	80.46	0.00e+00	1652.00
IUUC-Xtr-132057	Xenopus tropicalis	37.63	4.00e-85	309.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence