iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Zma-134955

UUCD1 version

UUC-ZeM-00733

Ensembl Protein ID

Zm00001d044273_T002

UniProt Accession

A0A1D6NK38; A0A1D6NK38_MAIZE

Genbank Protein ID

ONM40613.1

Protein Name

DENN domain and WD repeat-containing protein SCD1

Genbank Nucleotide ID

CM007649

Gene Name

ZEAMMB73_Zm00001d044273

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d044273	Zm00001d044273_T002	Zm00001d044273_T002

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.30e-38	130.0	240	276
UBD/Beta-Prp	1.50e-58	200.3	132	357

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sdtllvsGsdDgtikvWDlrtgvll 36
           gH+++v++++  s+ +++ +s+Dgt+k+WD+rt++++
   Q: 240  GHEAPVSSVRMlSGERVLIASHDGTVKMWDVRTDTCV 276
           8*********88776777777*************997 PP

UBD/Beta-Prp

   S: 38   dvttgkllrslsgheaevtavkfspdgk............ilvtgseDrtikvwdls..tgkcvhtlkghedsvlslsfspsgdklvsGs 113
           + +t++ +r+l gh++++ta+ +  +++            ++++gs+D t+k+wd+s   ++   tlkgh++ ++++s+++   k+vsG 
   Q: 132  QKKTQTNMRTLRGHTGAITALHCVTRKEvwdlvgdredagFFISGSTDCTVKIWDPSlrGSELRATLKGHTRAIRTISSDR--GKIVSGA 219
           33344459*********66665555555555555555568**************766669*********************..******* PP
   S: 114  hdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgt 203
           +d+ + vwd +t + le  l+gh++ v++v++ + g  +  +s D+tv++Wd++t++++ t     +++v ++++d++   l+++++d t
   Q: 220  DDQSVIVWDKQTFKLLE-ELKGHEAPVSSVRMLS-GERVLIASHDGTVKMWDVRTDTCVVTVGR-CQSAVLCMEYDDSTGILAAAGRDIT 306
           ****************9.***************9.777777899******************76.99*********************** PP
   S: 204  vklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdl 256
             +wd+++++ + +l+ght++++s+r++  +e +++gs+D + r+W l  g++
   Q: 307  AHVWDIRSSKQMFKLQGHTKWIRSMRMT--GETIITGSDDWTARVWSLNRGTC 357
           ****************************..****************9998876 PP

Organism

Zea mays

Protein Sequence
(Fasta)

MGRPRMRSAN YVTLVTAQLI LMATHMAGLG LPDIDSWNMI EKIAERNNLG YKQLIKLRAL 60
LTHLQQLRIG YWGVATGKSQ PLQSYGMASP HAIDVIDESQ QPAEASGLGR SWVQSDGNAV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGGCCGCC CCCGCATGAG GTGTCACTTG GGTCGCCAGG ACAGCAGAAT TTTCTTAGTC 60
GGGTTTCTAA AGCTGTTGGC GCCGTTCTTC CACTTCCGAA GACAGTGACT GAAGGCCGAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0732--Signal
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002593	Amborella trichopoda	70.38	0.00e+00	735.00
IUUC-Aly-005508	Arabidopsis lyrata	70.29	0.00e+00	723.00
IUUC-Ath-007614	Arabidopsis thaliana	71.07	0.00e+00	739.00
IUUC-Bgr-012075	Blumeria graminis	31.33	7.00e-27	115.00
IUUC-Bdi-014863	Brachypodium distachyon	86.59	0.00e+00	913.00
IUUC-Bol-015997	Brassica oleracea	70.23	0.00e+00	732.00
IUUC-Bra-017065	Brassica rapa	70.23	0.00e+00	732.00
IUUC-Gma-042682	Glycine max	69.47	0.00e+00	769.00
IUUC-Hvu-047377	Hordeum vulgare	93.33	3.00e-177	613.00
IUUC-Lpe-051109	Leersia perrieri	86.13	0.00e+00	827.00
IUUC-Mtr-058651	Medicago truncatula	69.33	0.00e+00	760.00
IUUC-Mac-065420	Musa acuminata	74.46	0.00e+00	801.00
IUUC-Oba-075961	Oryza barthii	82.05	0.00e+00	824.00
IUUC-Obr-076806	Oryza brachyantha	88.95	0.00e+00	934.00
IUUC-Ogu-078716	Oryza glumaepatula	82.25	0.00e+00	828.00
IUUC-Oin-079809	Oryza indica	89.17	0.00e+00	927.00
IUUC-Olo-080386	Oryza longistaminata	81.65	0.00e+00	866.00
IUUC-Ome-081107	Oryza meridionalis	86.59	0.00e+00	889.00
IUUC-Oni-082213	Oryza nivara	76.73	0.00e+00	775.00
IUUC-Opu-083850	Oryza punctata	83.89	0.00e+00	799.00
IUUC-Oru-084982	Oryza rufipogon	83.68	0.00e+00	796.00
IUUC-Osa-086141	Oryza sativa	89.15	0.00e+00	927.00
IUUC-Ppa-095259	Physcomitrella patens	52.01	8.00e-151	527.00
IUUC-Pop-100034	Populus trichocarpa	73.66	0.00e+00	791.00
IUUC-Ppe-101883	Prunus persica	68.58	2.00e-130	459.00
IUUC-Smo-109566	Selaginella moellendorffii	54.10	3.00e-148	519.00
IUUC-Sit-109736	Setaria italica	92.31	0.00e+00	965.00
IUUC-Sly-111483	Solanum lycopersicum	70.04	0.00e+00	742.00
IUUC-Sbi-113820	Sorghum bicolor	94.08	0.00e+00	981.00
IUUC-Tca-121657	Theobroma cacao	73.90	0.00e+00	784.00
IUUC-Tae-124598	Triticum aestivum	84.78	0.00e+00	908.00
IUUC-Tur-126080	Triticum urartu	84.62	0.00e+00	877.00
IUUC-Vpa-130709	Vicugna pacos	27.83	6.00e-27	115.00
IUUC-Vvi-131550	Vitis vinifera	70.61	0.00e+00	751.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence